GgaINT0064470 @ galGal4
Intron Retention
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54549996-54550667:-
Coord C1 exon
chrZ:54550424-54550667
Coord A exon
chrZ:54550222-54550423
Coord C2 exon
chrZ:54549996-54550221
Length
202 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
ACATGGCCTTTTTCTTGCAGGTA
3' ss Score
10.79
Exon sequences
Seq C1 exon
ATTTGGAGATGGTTATACCATAGTGGTGCGAATTGCAGGGGGTAACCCAGACCTGAAGCCAGTTGAGGAATTCTTTGGGCATGCCTTCCCTGGAAGTGTCCTGAAGGAGAAGCATCGTAATATGTTGCAGTACCAACTTCCGTCTTCGCAGTCTTCGCTGGCCAGAATATTCAGTGTTCTCTCCCAGAACAAAAAGAGACTCCACATAGAAGACTACTCCGTTTCTCAGACCACACTTGACCAA
Seq A exon
GTAAGTTTTTAGTAGCCTGTGTGCCAACTGTGGTCCTGGAGAGGTAGGAATAAATGAGCCAACTTACCTGACCTATCTTGTAAGGGCATTTCAGCAAGCTAGGTACTGTATTCCGGGACTGGTCCAGAAAGGACTCAGTGTATAGAATGCTCTAAATTAGCGAAAATCCAGGGCAGTGTATGACATGGCCTTTTTCTTGCAG
Seq C2 exon
GTATTTGTGAATTTTGCTAAGGACCAAAGTGACGACGACCACACTAAGGACCTGTCATTGCACAAAAACCAGACTGTGGTAGACATTGCAATCCTTAATTCCTTTCTGCAAGATGAGAAGGTAAAAGAAAGTTGCGTGTGAGCCAATTTCAGCCAAGAAATAATGAGCAGAATGCAAACTTCTTTTGCCTGGGGATAGGTTACTCCCAAAGAAGCTAGAGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433:ENSGALT00000024891:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAAGTGTCCTGAAGGA
R:
TGGCTCACACGCAACTTTCTT
Band lengths:
302-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]