DreINT0023590 @ danRer10
Intron Retention
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6208185-6212346:+
Coord C1 exon
chr14:6208185-6208428
Coord A exon
chr14:6208429-6210985
Coord C2 exon
chr14:6210986-6212346
Length
2557 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCTTCTCCTCAATCTCCAGGTG
3' ss Score
11.62
Exon sequences
Seq C1 exon
ATTTGGCGACGGGTACACCATCATTCTAAGGGTGGCAGGCCCTGATCCCGACCTGCAGCCGGTGATGAAGTTCATCGAAAGCGAACTTCCAGGGAGCACGCTGAAAGAGAAGCACAGAAACATGCTGCAATATCAGCTGCCTTCATCACTCACATCCCTCGCTCACATCTTCAGCATCCTCGCCAAAAACAAAGAGTTCCTGCGGATAGAGGATTACTCCGTCTCCCAGACCACACTAGACCAG
Seq A exon
GTGAGAGCGCCGTCAGTCACTGCACTCAAACATCTGTATCTTACAAAACAGCAGTATATAATGAAGGATTTTGTTGGAGTGTGAATAGTTTATATATCGTATTATTTTATATTAATATGTAGAATGAAATTAAATGTAATAATAAAACATATAGTAAATTCATTCATTTTCTTGTCGGCTTAGTCGCAGTGGAATGAACCGCCAACTTATCCAGCACATTTTTACGCAGCGGATGATATTATGCGATTGTATTGTATTGCAATATGGAACAATTAAGTGTTCATGTTAAATCAAAAGTAATTCACAAATACTTGAAAATTAGATGTTTTAATGACAATAATTCTGTATGGTCACAACTGAATTAATTACAAAATAACTGTATAAAATGATCAATTAAAATGATAAAAACATATTATATATATTGTACCCAGCTTAAATGTAAAATTAAAGTTACCAGACGTAGAAGGAGAGACACAGGGAGGGAGAGACAAAGAGAGCAAGTAGCCCTCAAAGAGGCAGAGAAGATAGACTCCAGAGGAGAGGAGTAGACCAGGAAAAGACAGCCCAGAAAAAGAGCTAGAGCAGACTTTTACACCTATTTTGTATCTTTCTTGACCATGTGACTAAAGCCCAAATGCTGAGACATTCAAACTGACCAATCAACATGTGACAACATCATAAATCCCCCAAAGTCCACATATCAAGCCCTGATCTTATCAGTATCTGCCTTTGGAGTCAGTATGGACCTTAAGTCAAAAAGACATGGTGTGTCATATAAACAAATGCATATGATAACTTAGCCTCTTACAATTATTTTAGTTTACTATTTGTTTATATTAATATTTGTTTATATTAGTTTAATACTTCTAAATATACAATTATATTACTTTAATATTTAATATTAATTAACTAATTATATTGGTTAATTATATTTACAAAAATATTAGTTTGTCGTGGACAAAAGTAAACAGCTGGGGCGTGGCCCCTAATAGTAATTCTGTGGGCCCCAAAACCCACCCCCAAATGACGCATTTGTATATATACATAGTACATTTACCTATTTATATCAGAATTTCTGATATTTCAGACATTAAGAAATCTTGAATGAAAACAAGGAAACTATCCCTTTTTTTGCAAAGATGCATTGTGCAAAATATAAGTAAATTATGTACATTTTAAAATGTTTTTTTATGCTTCATATTTACCATCTTGAACACCACTGTAAATGAAGAGTGAAAGTTAATATTAGCATTTTGATGAGACTTTCTTTTTGTCATGCTATGTTTAATTAATCTAAAATATTCAACATTTGTCGGAAACATTTTAAATTTGTTTTTTAATTGAGAAAAAGAATAGGATAAAATAGGGTTTTAAAAATATGATAAAATAAAATTATTCTTATTTATTTAAAAAAAGATATGATATTGTTTCATAATCATTTCGTATTGAAAATCCCTAAATTTCATTTATTTTCCTTTAGCTTAGTCCCTTATGGCCAGTGAATACAGTATGAATAAATGAATATATATGAACACATACAGCCCCATACAGTCTTCGATATGTTACCAACTACAGAAAAACTACACACAGCAGACATTTAGTCCTTATTTGGGTTCAAAAACAACACAAAATAAAGTCCACAGTCAGAGCAAACCTCTCTTCTGTGTCTAATCTTCAGCAGCACATGTAGCCTCCGTTAGAAAGTAATTTAGTCATTCTTAGTTCATAATAGTCAAAGAGACGATGATAATAGTAAAACATGGCAGTTTGTTCACGTTTTAGGTTGCTGAAACAATCATTTTCTCCTTTGGTTTTTCCGGCTTCTACCTTTGGTTTTTTTTGTGCGTCAGTCTCTCGTTTGTTCATTTCTGAAAGGATCGGATGTCATTATCACTTTAATAATCACGCGCATGTTACTATCATCAGCTCAATAAGTTTATTTCAAATATAGACGTGCATGCGAGCGCAAGCGAAAAAAGTAAACCAATAGGATTCAGCTGCACTTCTAGCTCCGTCTTTTGGTACCCTTTTGTTGTGCTAGGTACCCTTTGCAAAGGGTGACTAAATTACATAAAAACGTACTGAACCAAACTGTACCACTCAGTGGAAACGGGCCATTATTTATCAGGGGTTGCCGCAGCAGAATGAACCACCAAATATTTTGGCATATGTTATACGCAGTGGATGCCCTTCCAGCCGCAACCCAGTACATAATATGAAGAGAAAAAAAACTGAGGAAGGCATAGTGTCGAAACGTTTGTGTCTTTAAATCACCCCAAGTGTAAAAAGAAAGAAAAAAAGAAGAAGAAAACAGTACAAAGCAATTACTTGATGAGGGCGTATCATTATGTTTTTGAATAGCATTGACAAGATTAACACACCAAAGAAGTTTCTTTAAAAATCGCAAGCTTGCAGGTCAAACTTTAGCACTCTACGCAACAAAATAAATATTTTAAAAAAATAGCTTTAAAAAATTTCCAGGCTTGTGAAAAGTGTGCGGTAAAAACGATGCTTTCTCCTAACATGATCACTAAACGCTCTTCTCCTCAATCTCCAG
Seq C2 exon
GTGTTTGTAAACTTTGCGAAGGACCAAAGTGACGACCACTCGGACAGCTCAATCAGCCGTAAAGGGACGGCGGTGAACATGGCCCTGCTGACTCCGCTGTCCACTAAAGACAGCCTGGAGAAGCCCATGGAGAGCTTCGTATGAGCCGGACTCTCTCTTTACACTACATGCCAACGGGAGCCAGTGGAGTCCACACATTTCACATCTTTTTTATTTTTTGTGGCCTTCGAGCTGCAGTCTGCCCTCCTGATCCTCAGGCTGGAGATAAACCCGTGAGAGGCAGACGCCAAATGCAAGTCAATGCAAAAAAAAAAAAAAAAGAAATCAGAAAGACTTCTTGCGTTTCTAGCATGGCGGAATTCAAAGCATGCTAGTCGCGACGTTAAAACTTGAAGCCATCAATTCTGGTGTGTTTAGCGACAGTCGTCGATTATTTGAGATAATCGGCCTGATGGGGGGAAAATGCCAATGATCAATCATTCAGGGGTCCGTGTGTTTGCATTTTATTTTTTCGTAAGAAAACTGGAAATCACGTGCTGAAGAATCAATTTTTTTGCACGGAAAACCTCCAAATCGTACCTATTTTGGAAATGATTATGTTCGTGATGTGTCTTTATTTATAAACAAGCCATTGTTTTAGATGTTTTACAAAAGGGCATTGTTTTATTTTACTCCTAAAGTGCCTTGCGATAACTTTATAGTAAACACAAAATATTTGTGTGCGGGCGAAAACAAAAACGATTGATTTATTATTATTATTATTATTTTTAAATAAAGTAAGCTTTAAAGTTACACCGTGTAACAAATACCTCGAATGACAGCAAATCACTCAAACAACTGAGAAGAAAATCAGTTCAAACAAACCAATCGTGTGCCTTCTTTGGGAAAAAAAAGAGGCGTGTCCTGTGAGTCTATTATTGATGGACCAATAAGAATACAGAGCTTCCAGCTGTATTAAATTGAGTACAGTAAGGGTGATCGGTCCGTTTTCATCATTGAATCAGTATTTTGGATCTCTTTGGGAGAGGCGACAGCAATGTCAACCTTTCATCCGAGCACTTTACTTGCTGCGTTAATTGAAAATTTTGATTTAATGTCAAAACGTGTTAATCTCTTTGCACTGGATTTTCCACAGACAATGTTTTTGCCGCTTTTTTTTTTTTTTTTCCTCAGTGACCGTTTAGTTTCGGTTTGGGTTCGAACAAAGTGATTGCAAACCTAAAAGGACAAACGTTTTAGCACCACCGTTATGTTGCTCATTAATATCTGTTTACATTTCAAACTTATGGCTGTGGAATGTCTGTTACTCGTCTTGTACACTTACTGTATTTACACAATAAAACACAACAGTTCTACAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009:ENSDART00000051556:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.128
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]