GgaINT0034999 @ galGal3
Intron Retention
Gene
ENSGALG00000005752 | F1N8D7_CHICK
Description
NA
Coordinates
chr8:14430502-14431824:+
Coord C1 exon
chr8:14430502-14430751
Coord A exon
chr8:14430752-14431691
Coord C2 exon
chr8:14431692-14431824
Length
940 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCTTCTTTCTTCACGTAGGTT
3' ss Score
10.7
Exon sequences
Seq C1 exon
GTTTGGAGATGGCTACATTGTCACACTGAAAATCAAGGCTCCTAAGACTGGGATGCCTCCAGATCCAAGTCGTGCTGAACAATTCATACGCATAAACTTTCCAGGGAGCTTACAGAGAGAGAAACACTACAACATGCTGCAGTATCAAATTTGCTCCTCTTCTCTGGCTAAGATTTTTCGGTTAATAATCTCCAATAAGGAAAACTTGTATATTGAAGAATATTCTGTCTCTCAAACAACATTAGATCAG
Seq A exon
GTGAGTAAAAATTCCTTGAGGAAGCCTATTAGGCAATGCAATGACAATGTATCCAAACAACTGAAGGATCAAACTGCTTAGAGTAGAGAATTGTCTTGAACCTCTTTCTCAGACAAAATTCCCATGCCCCTCATGAATGAGGGTGGATCAGATAAGAAATCTGTAAATTCCTTCTGTGAATTAGGTGCCAATTGAAAGCTGCTGAGCCAGCATTTCCCAGATGTCAGAATTCACACAAATCCATTCTGTCAGGAGCCACAGCCTGAGGAAGATCAGCTAGTCAGACTAAGCCTCACTGAGCTGGGAATGATCTAATATCTCTTTGAATTTTATTTTGTATAAGGTATTTGGGTTGTGTTTTGTCTGAGATGCTGATAGAGATATGGTGGTATCTAGGTAAATGCTTTTTTCTCTCTGTTGCACATTACTATACAAAAGCAATTTAGATAAATAGAGCCTGGAAAATCCACTGGGACTGTTGGCAATATCCAGTCAATCTCTAAAGGATATTTGCCCCATTGCCTGCTTTCCTGAGTAGCTAATGATCCACATTGATGAAGCTAGCACTGGTGAGGGTGGTAGAGAGACATTCTGGCTGCCTTACAGCTCCTACTGAACTACTATCCCCTCTTCCTCATCACCACCAAGCTCAACTGTAGTGTACAAGGCCATGTAAACCATCTCCTGCTGAAGACAAAATAGGATCTTAGGATCTCAGTTGCAAGTTACTGCAACCAAAGGAATGAAGTTGCAAGGAAGTTTATCAAAATAAAGGAGGAATTAATGATCCCTGCCAATGCCCAGTGTCTCAGTTCTCAGTACATATCTTCAGATTCCCCATTCTGTCTATTCCCTGCAGAAAGGCCAAGAAGATACAAATGTATAGAGACATTCCACTAACTAATCTCAGTTGATGTCATTTTCTTCTTTCTTCACGTAG
Seq C2 exon
GTTTTTGTGAACTTTGCTAAGCAGCAGGTGGAGGATGAGGAAATTCCTTTGCATCCTCGTGCAGCTGGATCCAACCGAGAAACAAAGGTGTCCCCTGCTTCACAGCAGCAGGCAGATGCATAGACTATTCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752:ENSGALT00000009238:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.675
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGCTCCTAAGACTGGGA
R:
GTCTATGCATCTGCCTGCTGC
Band lengths:
343-1283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]