GgaINT0065212 @ galGal4
Intron Retention
Gene
ENSGALG00000015382 | CHRNA6
Description
neuronal acetylcholine receptor subunit alpha-6 precursor [Source:RefSeq peptide;Acc:NP_990695]
Coordinates
chrZ:53429472-53430701:+
Coord C1 exon
chrZ:53429472-53429516
Coord A exon
chrZ:53429517-53430591
Coord C2 exon
chrZ:53430592-53430701
Length
1075 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
CTTATCCGTTCTTCTTTTAGATC
3' ss Score
12.52
Exon sequences
Seq C1 exon
GATGAAGTCAATCAGATTATGGAAACCAATTTGTGGCTAAGACAC
Seq A exon
GTAAGTGACTGCGTTGCGTTTCTCACATACTTTGCATTAAGGTGATGGAATGTTAGGTCTATATAATACGTGCTTGTTTTGCAATGTGGTCTAGAGGTACACATAATGAGACTACATTAGCAAAATTTGAATAAGTAATTTCTTTCTTTTTTTTTTTTTCCCCGCAAGAAGTTATATATCCCATCTTTCCTGTGTTCTGAGTTTCCATTATCACTGGTTTATCGCTAGAAAATTTAGCTGAATGTGCCCTTTAAGAGTGATTAAAGAAGCAACTCTGTGATCCTAAGTCATCTCCATATTGAAGATTCCAATGAAAACATTTGTTAGCAAAAAGGACATGCCTCCACTTCACCTGATGGTTTTAGCACATATACACAGGCAAAGATCCCTACAAAATTTTATCTGCTGAGAGAAACAAGCTATCTTTCACCAAAACAGCTTCCTCCAGACTCTGTTTGTGATCTACACAAAGTTTTCTTGAGAAGCAAGGGTACTTAAGACCAGGATCTTCAGAGTAGGCTGTGAGAACTTGGACCATACCCCAGTGATTAGTCACTAGAGAGCAATGAAAGGTGTCCCTAGCTGCTCCTGAGCTCGTAATTCACTGCCCCTGTAAAGCCAATAATGTTTCCCAGCCACATCAACCTGCCTTTGTGCACAGGCACCTCCTTTCCTTTTAGATTGTCTATCTCCTTTGATGTTAGTCTCCTTTAGCCTTCAGGACCCACTCCAATAAGGGCAGCAGCAAGAACTGTGTCTCTTGCTTGCAGTGCAGCGTAGCACTGCTATACACTAAGGTAGCAAGCCAGAGGAGAGATCTCAGCACATCAGCAGCTAATAGCTGTTGTTGTCATAGCTCTTCACAGAGGAAGAGATGGCAAGCCAGTGTGAGCAATGCTCACCTACGTCCCATGTTTCTCCAGCTTGTGATTTTGATGTCTTTCAGGTCACTGTCCCCTTCTACTCACGATTCTTTTCCAGTCTCTATTGTAACCTGTCATTCGTGGGGAAGATCTATGAGGCAGATACTTGCTGATAACACAGTGTTTATACTTCTTATCCGTTCTTCTTTTAG
Seq C2 exon
ATCTGGAATGACTACAAATTGCGATGGGATCCCAGAGAATATGATGGAATTGAATTTGTTCGGGTACCAGCAGATAAAATTTGGAAACCAGATATTGTCTTATACAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015382:ENSGALT00000037792:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]