GgaINT0066424 @ galGal3
Intron Retention
Gene
ENSGALG00000015373 | Q802E5_CHICK
Description
NA
Coordinates
chrZ:52389248-52389840:-
Coord C1 exon
chrZ:52389688-52389840
Coord A exon
chrZ:52389338-52389687
Coord C2 exon
chrZ:52389248-52389337
Length
350 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCCATTGTTTTTCTTTACAGCTT
3' ss Score
10.84
Exon sequences
Seq C1 exon
TGTCCCCAGTTCAGTTCATTTGTTGATGAGCTCACCGACTACACTACAAAAAGCATCCTTGCAACACCCATCTTGAATGGCAAAGATCTAGTTGCTGTCATTTTGGCTATTAATAAGCTGAACGGCCCATTCTTCACCAACTCTGATGAAACA
Seq A exon
GTAAGTGGTCAGTAATTCAGTTTCTACCAAGCAGTTGTTGCATTGCTGCATAACATTTATAACATGGGTTATACATCCCTCTACATTAGGGATGTCTGCTTTACTGAAGCACCATGGTGTATATTTCCCCACAGGGGACCCGCCCTGTAACAGAAGAGGCTTATTATGAGGATGCTTACCTCAGAAATCTTTCAGGGAAGTTACGGTGGGATAAGCCTTATCTCACACTGGTGCAAAGCAAAGCATTTATCCAGGGGAATTACCATGACGTTGCTGAAGTGCTGTTATGAAATCCAATATACATGAGACTGCTACTGCATCTGACCCAATTCCATTGTTTTTCTTTACAG
Seq C2 exon
CTTTTCCTGAAGTACCTGAATTTTGCTTCCTTAAACCTGAAAATTTATCACTTGAGTTATCTTCACAACTGTGAGACTCGAAGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373:ENSGALT00000032798:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(33.3=100)
A:
NA
C2:
PF0159021=GAF=PD(8.0=40.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCCAGTTCAGTTCATTTGT
R:
TGGCCTCTTCGAGTCTCACAG
Band lengths:
242-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]