GgaINT0069566 @ galGal3
Intron Retention
Gene
ENSGALG00000009268 | FGG
Description
NA
Coordinates
chr4:21416212-21416990:-
Coord C1 exon
chr4:21416827-21416990
Coord A exon
chr4:21416442-21416826
Coord C2 exon
chr4:21416212-21416441
Length
385 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
TTTCTTTTTTTCTGTTGCAGGTT
3' ss Score
13.43
Exon sequences
Seq C1 exon
GTGGTGTGTACTCTAGAGATACTGGTACAAATTCATATGACAATGGCATTATATGGGCAACATGGCGTGACCGATGGTACTCCATGAAGAAAACTACAATGAAAATCATCCCATTCAACAGACTCTCAATAGATGGACAGCAGCACTCAGGAGGCCTCAAGCAG
Seq A exon
GTTTGACCATTGGACAGAGGAGATACTTAAAATAGCATCAAAATACGGTTATAATTGCAAGTACAGAGCATGGACAGCTGAAATGTTATGCCTACTGCATCTTGGAGGCATCAGCTTTGTTTACCATTTCATCACAGAAATATTTGCGTTTTGATTTTAGAATACCTTCCTCTTCACTGTTTCTTTTAAGAAATAGTTAAGTAGATAGTCCCAGGACTAAAAATAATTCCTTGTCTTCATGTGTTTTAATTGCTGAAAATTAAATTTCCAACTAATATAACTATGTATGAACACTATCAACATATCATTATCAAGCCTTATGTACTTCATCTTTCTTTAGAAGAACATTAAAATACTGTCTTTTTTTTCTTTTTTTCTGTTGCAG
Seq C2 exon
GTTGGAGACTCATAAAGGGGCAATTTAATAAAGACTGATCTGAATGGAGAAAATAAATCTTTTATTTGTACGACACTGAACTTATCTCACCTTCCACAATTTGGACATCAGTGTTGTGAAATGTCATCGACTATAAAATGCACAACAGTTTTCCTTGAGCAGCGCTTACCTCTTTACATGGTTATTTTTTCTGTACACATTCCCAATAAATTTTTGATTATTACAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009268:ENSGALT00000032295:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PD(15.8=69.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGTGTACTCTAGAGATACTGGT
R:
TGTAAAGAGGTAAGCGCTGCT
Band lengths:
342-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]