HsaINT1013634 @ hg38
Intron Retention
Gene
ENSG00000171557 | FGG
Description
fibrinogen gamma chain [Source:HGNC Symbol;Acc:HGNC:3694]
Coordinates
chr4:154604134-154605066:-
Coord C1 exon
chr4:154604897-154605066
Coord A exon
chr4:154604355-154604896
Coord C2 exon
chr4:154604134-154604354
Length
542 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
GTTTTGTTATATATTCACAGGCT
3' ss Score
6.65
Exon sequences
Seq C1 exon
GTGGCACTTACTCAAAAGCATCTACTCCTAATGGTTATGATAATGGCATTATTTGGGCCACTTGGAAAACCCGGTGGTATTCCATGAAGAAAACCACTATGAAGATAATCCCATTCAACAGACTCACAATTGGAGAAGGACAGCAACACCACCTGGGGGGAGCCAAACAG
Seq A exon
GTCAGACCAGAGCACCCTGCGGAAACAGAATATGACTCACTTTACCCTGAGGATGATTTGTAGAAAATTAACTGCTAACTTCTATTGACCCACAAAGTTTCAGAAATTCTCTGAAAGTTTCTTCCTTTTTTCTCTTACTATATTTATTGATTTCAAGTCTTCTATTAAGGACATTTAGCCTTCAATGGAAATTAAAACTCATTTAGGACTGTATTTCCAAATTACTGATATCAGAGTTATTTAAAAATTGTTTATTTGAGGAGATAACATTTCAACTTTGTTCCTAAATATATAATAATAAAATGATTGACTTTATTTGCATTTTTATGACCACTTGTCATTTATTTTGTCTTCGTAAATTATTTTCATTATATCAAATATTTTAGTATGTACTTAATAAAATAGGAGAACATTTTAGAGTTTCAAATTCCCAGGTATTTTCCTTGTTTATTACCCCTAAATCATTCCTATTTAATTCTTCTTTTTAAATGGAGAAAATTATGTCTTTTTAATATGGTTTTTGTTTTGTTATATATTCACAG
Seq C2 exon
GCTGGAGACGTTTAAAAGACCGTTTCAAAAGAGATTTACTTTTTTAAAGGACTTTATCTGAACAGAGAGATATAATATTTTTCCTATTGGACAATGGACTTGCAAAGCTTCACTTCATTTTAAGAGCAAAAGACCCCATGTTGAAAACTCCATAACAGTTTTATGCTGATGATAATTTATCTACATGCATTTCAATAAACCTTTTGTTTCCTAAGACTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171557:ENST00000404648:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.198 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PD(15.8=66.7)
A:
NA
C2:
NO
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCACTTACTCAAAAGCATCT
R:
TCATCAGCATAAAACTGTTATGGAGT
Band lengths:
342-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains