RnoINT0060925 @ rn6
Intron Retention
Gene
ENSRNOG00000025074 | Fgg
Description
fibrinogen gamma chain [Source:RGD Symbol;Acc:2613]
Coordinates
chr2:181993611-181994514:+
Coord C1 exon
chr2:181993611-181993780
Coord A exon
chr2:181993781-181994312
Coord C2 exon
chr2:181994313-181994514
Length
532 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
GTTTTATTGTGTATTCATAGGTT
3' ss Score
8.38
Exon sequences
Seq C1 exon
GTGGCACTTACTCCAAGTCATCTACTCCTAACGGTTATGACAATGGCATTATTTGGGCCACCTGGAAAACCCGCTGGTATTCCATGAAGGAAACCACCATGAAGATAATTCCCTTCAACAGACTCTCCATTGGAGATGGGCAGCAACATCACATGGGAGGATCCAAACAG
Seq A exon
GTCAGCGTGGAGCATGAAGTGGATGTTGAATACCCGTAAATCCTCTGCCTGGACATTTTAAATTAGACACAAAGAATCAACTATTAACTTCTATTAGCCTGTACCAAGTTCCAATAGTTTCCTCAAATTTTCTTCTATACCTCTATATTCGAGTTATTAATTTTGGTCTCTCTTAAAATGATATTTAGCCATAAATGGACATTAAACCCCACGTGAACCATGTTTCTAAGTTACTTGAATCAAAGTTATTAAAATTTGTTTGTTTGAATGGACAACATTTTGTTTGACCTTTCCCCTAAATATTAAAAGTAAAACTACTGTACTTTATTTTATGATCAGCTGTAATTATTGTTTTTGTTGTTGTTGTTTCCTGAGTATTTTTAGTATGCACTAATAAAATAGGAGAAATTTTTAGAACTTCACCTGTATATTTTCCATGTATTTTACCTCTACATCATTAGTATTTAATTCTTCTTTTTAAATGAAAAGTTATATTTTTTAATATACCTTTTGTTTTATTGTGTATTCATAG
Seq C2 exon
GTTGGAGACATGTAAAGAACATTTCCAAGGTGATTTGCTCTTTTAACGGACTTTATCCAAGCAGAGAGATATATTTTTCCTATGAGACCATGGAACCTCACTTCCTTTACAGAGTTAATGGGATCCATGATGCAAACTCCATTAGCAGTTTTATGCTGGCGATAATTTATCTACATGCATTTCAATAAACATTTTGTTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025074:ENSRNOT00000034521:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PD(15.8=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCACTTACTCCAAGTCATCT
R:
GCATGTAGATAAATTATCGCCAGCA
Band lengths:
348-880
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]