GgaINT0069566 @ galGal4
Intron Retention
Gene
ENSGALG00000009268 | FGG
Description
fibrinogen, gamma chain precursor [Source:RefSeq peptide;Acc:NP_990320]
Coordinates
chr4:19803833-19806373:-
Coord C1 exon
chr4:19806210-19806373
Coord A exon
chr4:19805825-19806209
Coord C2 exon
chr4:19803833-19805824
Length
385 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
TTTCTTTTTTTCTGTTGCAGGTT
3' ss Score
13.43
Exon sequences
Seq C1 exon
GTGGTGTGTACTCTAGAGATACTGGTACAAATTCATATGACAATGGCATTATATGGGCAACATGGCGTGACCGATGGTACTCCATGAAGAAAACTACAATGAAAATCATCCCATTCAACAGACTCTCAATAGATGGACAGCAGCACTCAGGAGGCCTCAAGCAG
Seq A exon
GTTTGACCATTGGACAGAGGAGATACTTAAAATAGCATCAAAATACGGTTATAATTGCAAGTACAGAGCATGGACAGCTGAAATGTTATGCCTACTGCATCTTGGAGGCATCAGCTTTGTTTACCATTTCATCACAGAAATATTTGCGTTTTGATTTTAGAATACCTTCCTCTTCACTGTTTCTTTTAAGAAATAGTTAAGTAGATAGTCCCAGGACTAAAAATAATTCCTTGTCTTCATGTGTTTTAATTGCTGAAAATTAAATTTCCAACTAATATAACTATGTATGAACACTATCAACATATCATTATCAAGCCTTATGTACTTCATCTTTCTTTAGAAGAACATTAAAATACTGTCTTTTTTTTCTTTTTTTCTGTTGCAG
Seq C2 exon
GTTGGAGACTCATAAAGGGGCAATTTAATAAAGACTGATCTGAATGGAGAAAATAAATCTTTTATTTGTACGACACTGAACTTATCTCACCTTCCACAATTTGGACATCAGTGTTGTGAAATGTCATCGACTATAAAATGCACAACAGTTTTCCTTGAGCAGCGCTTACCTCTTTACATGGTTATTTTTTCTGTACACATTCCCAATAAATTTTTGATTATTACAGAAGAGCTGAGTTTGCTATTTGTGTTCTGCTGTTGGCCGAACACAACACAGTAAACACTGTGACTGCTGGAAGGGTACTCTGAACAAATCTGGTTCAGTTTTTCCTTCTCTTTATTTAGAATTATGTGCTGGAGCTATTTCTCCATAAAACATGGCTAGCTTTCAACAGTCTTCACTTTGTTTTCTGATGAAACTGTCAATTTGTGACACAGACCAAAGTACACAGCAACTTGAAAGGACCTAGTTTGCTGCTGGAGCCGCTTAAACAAACATACCACAGGTTAGGAAGTACACTATCAATGACAAAGATATTTTACTCCAGAGCATGCATATTAACATGTTTCTCAAATATTATTCAAAATAAATGTTTGGTTTGTAGCACACAGTACTACACTGTACAAGGATTATACTTGAATACCACATTCATAAACTTATTAAATTACTCTAATGTTTTTAGCATCATTTTCAGACCAAAAATAATACAATTTGTAGTATTAATTAATTATGGTTTAGTTCCATTTGCTTTTATTATGTGTGGTAATAATCTTCCAGTGATCCACACTGACAGCACAGATCAGTAGAAGCAGGGTTTGAGATGCTGTCTGAATGTAATCACTCAGAATGTTTGATGAGTATTTCTGGGTAAGGGATTTAGAATATCATATTACTTTTGAGGATACATTTATCAACAAAATATATAGAGAGAGCTAGAATATATATATATTTATATATGTCAAGCTGATATATAAAGAAATGCACCCTCATCTTTATTTTTAGGTACCACTGAATAGCCACAATTTCACCTGGCATTTCTGAATAGCACATTTAAATGGCTTTTTTAGAGACAAGGAAACATTACACAAATAAGATGGACCTCGAAGGCCACCTTGACACTTTTCCTGTTGAGGTGGGCAGCTCTATGTCTAGTTTGCCACCAAGCTGCTTTGCCTGAGTCTGAATGTTCACAGCACGACATGCTGCTATCCACTTATTGCTTATACTGTAGTTGTTTTGAGTGGCCAAGACACCTTCGCTTTCTATTTTCAGTTTAACCCCAACTATGATATGACTTTAAAAGTTGTTTTATTCATATATGTACTACATGGAATTAAGAAGTATTCCTTTCCACTCTGAATCCACATTTCTCTAGGTCTGAACTGTTCTCCTAGACTTTTTGTTGCAATGCCTTATCTGATGACAATCTGCTGTAAAAACAAATATTCCACTGGCGTGACCTGGCATTTTATGGATTGCTAATCAGAACAAAGACTAACTCATTCTTTCATTTGGTTTGCTGATTGGTGTTCTGAGGTCTCACAAATAATTTTGAGCCTCTTTGAAGAGGACCATCTGTTCCAGAGATCTGGAGAGTTGGAGCTGCTGAATCCAACAAACCTGATTGCTCACAGAAGTCCTGTGCCAGGGCTCATGACAGGGTCTACCAGACACTGCAGGTATATTCCATGGGCCTTGAAAGAAGCCTGTCAAGAATCATGCCTTTTGGAGATCTTTTCTACTGCTTCCAACCATGGAACTATCAGAAAGGGACCTGAACAGATCTTCTGTTTCTCCTGTCTCTTATAGAGAAATTCATACTCTCGTGTTTTGTGGGGTTGTTTATTTGTTTTTGTTTGTTTCTTTGTTTTACAAGTAAATACACTGTGTTTTGACTTAATGCCTCCATTTTGTATTCTGAAAGGTCTTATTTCTCTTTTCTAAATCAGTTTAAAATTGCACAAGGCCTTCAGAGCATAGCCTACATAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009268:ENSGALT00000015079:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PD(15.8=69.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGACAGCAGCACTCAGG
R:
TCAGAGTACCCTTCCAGCAGT
Band lengths:
342-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]