GgaINT0070336 @ galGal3
Intron Retention
Gene
ENSGALG00000011762 | UBA6
Description
NA
Coordinates
chr4:53158773-53160581:-
Coord C1 exon
chr4:53160543-53160581
Coord A exon
chr4:53158841-53160542
Coord C2 exon
chr4:53158773-53158840
Length
1702 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ATTCTTTATTTTGTAATCAGTTT
3' ss Score
5.31
Exon sequences
Seq C1 exon
GAGCAGCAAGGAGTTAGCTGAGCCTGTGGTAACTTCGAG
Seq A exon
GTAAGAAGCACCATGAAACCAAACCAAAACCCACGACTCCTGAGCTTTTACCCCTCTTCAGAGCATCTCGGTCCTTCTCTCCCAGTCATAGCTTCTTAGTTTGTCTCTGGACTGTGTTCTGCAAGCAGCTGAGGCTGAGAAGAAATGGAAGCATGTGTAAGCATTGAGCACTTGGTAAGGACCCATAACCGGGTCCTTTGAGAGGGGTTCAAATGGGTTGACATAAAGTGAGAAATACAGCTTAGATGCTGGAATACATTAGCAGAGTTTTGTCCTAGAGCCTCTTGACCAGAGTACTACTAAGTTCTCTTTTGGAATAACTAAATTTGTTTTGCCAAACACAGTTGGCATGCAGGTAGTAGCTCTGTGCTGTAACAAAGAATGCAGGAAGAGAACTGATGGTAGATAAATATGTGTTGGAAATGCCATTCTCAGATGTCTCTGTAATTCAGATGGCAAACCTTGTGTGTTCATTGCGTGTTCTCATTATTTACAAATGGCTACTGGGCAGAGCTTATGTGATGGCTGTCAGTAAGCGTGCTGCTGCAGCAGAAGCAGCTGGAGGGCTGTGAGGGAGGAAGATGGGTGTGTTTTGCCTCAGGGTGGGTTAGCTTCTCCACCAAGGTAGGGAAGGTGGGTTACCTTCGTACCAAATCCATTTTGTTTTGGACAGTCCTAAAGTCAATGTGCTATGGAGGGTGATCACAGAGGAGCTGAGCAGCTCAGGGATGGTTGCTTTGGAATGAGATGGTGATGGTGTAATCTGAGGAGACTTTCAATCTGATTTTCTAGACAAAGAGGAAAAATTAAGGCTTTTAGCTGAGCAGAGACTCAAGCACTGGACTCTCAGATGTGGTCTGATACTTTCTGCCTTGAGAGCTGTTTTCTAAGATCATCTATTAATGTTGATATTGCTTATATTCAGTGCTTGCTGTGTAAGTACATAGGAGCAGTGCTGAAGTGGCTAATGATGGAAGGTGCTACATGCTAATTGCCTTTTGTGTTGGCTAATGTGTGAGATCTAGTATCCACAGTGTTAAGCAGCTTTCAGATTTGTGGCCTACACTCCAACATATCCCTGTCTCTCCTCTCTTAGGAGCAAGGATTGTAAGCTGCGTCTAAGAATCTGTTGGTTTCCAGGGCTGTTTGTGGGGATCTTGTATGTGTTCTTTCTTAGCTGTGATGGGTACTGATGCTCTGAGTTGGACGTAGGGGTTGATTTGCTTCTCCTGTATTTGGTGGCAGTTCGTGCTAGATCCAGAAGGAACAAATTCCTAGCCTGTGTAACAAAAGAATCATAGAATGACTTGGGTGGGAAGGGACTTTGGAGAACCCATGGGCAGGGTTGCCAGCCACTAAATGAGACACTGGATCAGATTGTCCAGGGCCCCATCCAACCTCACCTTAAAAAACAAACAATCAAACAAAAAAACAACTTCATGAATTTGCATGTCAACCTGTACAGTGGCAGAGCTTCTTCATAATCCTGGTGCTTACTGGTAACTTTAAAATGAGAAGGTCTTAATAGCACGTATACTCTGTTCTTAGAACTCTTTCCAACTGTTTAATTTGACTTCTTAGTTAAATGTATTCACATCTTAATGTGACATTTTTGCTCAGTTTTTCAACAGAATAACTGGAAGTGGCAGGGAAGATGGCAAGCTGAAATCTGTTTTAACTATATTCTTTATTTTGTAATCAG
Seq C2 exon
TTTAGTGCAAATCAATCACATTGCATCATGGCAACAGACTCTATGGAAATCGACGATGCTTTGTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762:ENSGALT00000019202:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]