GgaINT0070336 @ galGal4
Intron Retention
Gene
ENSGALG00000011762 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr4:51063234-51065125:-
Coord C1 exon
chr4:51065004-51065125
Coord A exon
chr4:51063302-51065003
Coord C2 exon
chr4:51063234-51063301
Length
1702 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ATTCTTTATTTTGTAATCAGTTT
3' ss Score
5.31
Exon sequences
Seq C1 exon
GGAGTCTGCCTCGACCGGGATCTGCCTCCGGAAGCCCTGGGTAGGTGGGATGCGGCCAGGCCTCCCTGCTGTCCCGGCCTGCTGAGCAGCAAGGAGTTAGCTGAGCCTGTGGTAACTTCGAG
Seq A exon
GTAAGAAGCACCATGAAACCAAACCAAAACCCACGACTCCTGAGCTTTTACCCCTCTTCAGAGCATCTCGGTCCTTCTCTCCCAGTCATAGCTTCTTAGTTTGTCTCTGGACTGTGTTCTGCAAGCAGCTGAGGCTGAGAAGAAATGGAAGCATGTGTAAGCATTGAGCACTTGGTAAGGACCCATAACCGGGTCCTTTGAGAGGGGTTCAAATGGGTTGACATAAAGTGAGAAATACAGCTTAGATGCTGGAATACATTAGCAGAGTTTTGTCCTAGAGCCTCTTGACCAGAGTACTACTAAGTTCTCTTTTGGAATAACTAAATTTGTTTTGCCAAACACAGTTGGCATGCAGGTAGTAGCTCTGTGCTGTAACAAAGAATGCAGGAAGAGAACTGATGGTAGATAAATATGTGTTGGAAATGCCATTCTCAGATGTCTCTGTAATTCAGATGGCAAACCTTGTGTGTTCATTGCGTGTTCTCATTATTTACAAATGGCTACTGGGCAGAGCTTATGTGATGGCTGTCAGTAAGCGTGCTGCTGCAGCAGAAGCAGCTGGAGGGCTGTGAGGGAGGAAGATGGGTGTGTTTTGCCTCAGGGTGGGTTAGCTTCTCCACCAAGGTAGGGAAGGTGGGTTACCTTCGTACCAAATCCATTTTGTTTTGGACAGTCCTAAAGTCAATGTGCTATGGAGGGTGATCACAGAGGAGCTGAGCAGCTCAGGGATGGTTGCTTTGGAATGAGATGGTGATGGTGTAATCTGAGGAGACTTTCAATCTGATTTTCTAGACAAAGAGGAAAAATTAAGGCTTTTAGCTGAGCAGAGACTCAAGCACTGGACTCTCAGATGTGGTCTGATACTTTCTGCCTTGAGAGCTGTTTTCTAAGATCATCTATTAATGTTGATATTGCTTATATTCAGTGCTTGCTGTGTAAGTACATAGGAGCAGTGCTGAAGTGGCTAATGATGGAAGGTGCTACATGCTAATTGCCTTTTGTGTTGGCTAATGTGTGAGATCTAGTATCCACAGTGTTAAGCAGCTTTCAGATTTGTGGCCTACACTCCAACATATCCCTGTCTCTCCTCTCTTAGGAGCAAGGATTGTAAGCTGCGTCTAAGAATCTGTTGGTTTCCAGGGCTGTTTGTGGGGATCTTGTATGTGTTCTTTCTTAGCTGTGATGGGTACTGATGCTCTGAGTTGGACGTAGGGGTTGATTTGCTTCTCCTGTATTTGGTGGCAGTTCGTGCTAGATCCAGAAGGAACAAATTCCTAGCCTGTGTAACAAAAGAATCATAGAATGACTTGGGTGGGAAGGGACTTTGGAGAACCCATGGGCAGGGTTGCCAGCCACTAAATGAGACACTGGATCAGATTGTCCAGGGCCCCATCCAACCTCACCTTAAAAAACAAACAATCAAACAAAAAAACAACTTCATGAATTTGCATGTCAACCTGTACAGTGGCAGAGCTTCTTCATAATCCTGGTGCTTACTGGTAACTTTAAAATGAGAAGGTCTTAATAGCACGTATACTCTGTTCTTAGAACTCTTTCCAACTGTTTAATTTGACTTCTTAGTTAAATGTATTCACATCTTAATGTGACATTTTTGCTCAGTTTTTCAACAGAATAACTGGAAGTGGCAGGGAAGATGGCAAGCTGAAATCTGTTTTAACTATATTCTTTATTTTGTAATCAG
Seq C2 exon
TTTAGTGCAAATCAATCACATTGCATCATGGCAACAGACTCTATGGAAATCGACGATGCTTTGTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762:ENSGALT00000019202:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCTGCCTCGACCGG
R:
CTATACAAAGCATCGTCGATTTCCA
Band lengths:
190-1892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]