MmuINT0168839 @ mm10
Intron Retention
Gene
ENSMUSG00000035898 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:MGI Symbol;Acc:MGI:1913894]
Coordinates
chr5:86170555-86172803:-
Coord C1 exon
chr5:86172668-86172803
Coord A exon
chr5:86170618-86172667
Coord C2 exon
chr5:86170555-86170617
Length
2050 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
TGGGTTTTTTTCCCCCCTAGTGC
3' ss Score
9.63
Exon sequences
Seq C1 exon
GACCCTCGCGGCCCCGCCCCCTCGCCTGCCTCCCCGCCTCGCTGCAGTCAGTCTGTCGGAAGGCGATGGAGCGGTCCGAGCCGTTGGCTGTGCTTTCCTGTGAAGAGGCGTCCTGCTCCTCCTGGGGAGCCTGCGG
Seq A exon
GTGAGAGGCCTGGCCCGGGGCAGGCTGGGCGGGAAGGAGCGGAGGAACGCCGACGCGGGCTCCGTTCTCGCGTTCCGGCGGCTCGGAGCGCGCGGAGGCCACGGGGCCGCGCGGAGCCACAGGGAGCTAGCGAGGTGGCGAACGAGCGAGCGAGCCGGCGGGCGGTGGGTGTGGCGGCGTGGGCGCTGCCCTCGCTGCTCCAGCTCCGCTCCTCTGAGGAGACCGGCTCTTCCCGGGTCGGGTCCAGCATCCTTCCCTCAGGTCACTACTTCTGAGCGGCCAGTCATTCAGGAGAGGGTTGTGGCCCCTGTTGCTTGGCACACTTCCTTCAGCGCCACGGAGCACTATCCTCCTCCAGCCGTGCTCCTTAGGAAAACTGTTCTTGAGAGCTCAAGTCAGGATGAATCCGTTGCAGTGTGGACACCCCGAGAATCCTCTCTGTTTACTACGGGGGTGTTGGAGCGCGGGGCGGGGCCCAAGGTTCCTAGGATTATTTCCCGCTGAGGATCTTGGAGTTTTTCTTTCTCAGCCTGCAAAAATTCCGGGGTTGGGGTCCTGGTATACTCTCTCCAGTGTTTGCGTTAGTTCTCTTTTGGTCATCTTACAGTTAAGAAAGCCCCGCTTGTATCCTACCCAGTATATGACTATTACATACCAAATATAGAAGTGATGGATTTCTTACGTTACTAGCTTTACATTGCACATTGAGACATATACTTCAAGGACTGGATGGAAGTATTGTCTGCCCTGGCCAATGCTGCCAAAATCGACTTAAGAAATATTATTGAATACAAATATCTGCCCCTTAGTTGCTCTTACAGATGATTTGTTATTGTTGTTGTTGTTGTTGTTGTTGTTATTATTATTATTATTATTATTATATTGATTCTGAGGCTGGCTCCAAGTTTGCCAAAGATGGCTTCCTCCCTCCTCGTCTGAATTTCTGAGATTACAAGTATGTGCAATCAGGCGTGACTGTTTTTGAACATATTCTCGAAACAATCATTGAGACAGAGCTTTTTAAGTGTTGGCCATAGCCATTAAGCGGCTGAGCATAACCCCGTTCTCATTTTTAGTCAGAACTTTAATCCACCTAAGTCATTGTGTGTAACATAGAATAGCAAGTGCAATAAAGTGTGTAAAATAGAAACAAAATGATAGGATACTACAGGTTTATATATAGTTTTAGTATATGTTGTGTGAATATGCTGACTTTATTATATGAGGTGCTTACAGTGCAGTTAGTGTCTGGTTGCTCTAAAAATCTCAACAGCAAGCACTGCACATAGCAACAGTTAGTGAAATTAACTTCAACACATTTTAAAACTCTAAGGAAGATGATACCTAAGAAAACATACATTTTGTATGGAAGGACCTTGTCTAAGGGTTTCTATTCTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGAATAGCCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCCAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGACTAAAGGCGTGCGCCACCACGCCCGGCTAAGGGTTTCTATTCTTGTACAAAACCATGACCAAGAAGCAAGTTGGGGAGGAAACGGTTTATTCAGCTTACGCTTCTCATATTGCTGTTGATCACCAAAGGAAGTCAGGACTGGAATTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCCTTACTGGCCTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGGGATGGCACCACCCACTAGGGGCCCTCCCCCTTTGATCACCAACTGAGAAAATGACCCATAGCTGGATCTCATGGAGGCACTTCCCCAACTGAAGCTCCTTTCTCTGTGATAACTCTAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTACAGACCTTTAGTAACTTGGGAATCTTGTTTCATGCACAATTGAATTTCACATTATAGAGTATGAATAATTAAAACCCATATTTGCTGTTTAATAGTTTGGGTTTTTTTCCCCCCTAG
Seq C2 exon
TGCAAGTAAAAATTTACCTACCATGACAACAGAATCTTTGGAAATCGATGATGGATTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035898:ENSMUST00000039373:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types