RnoINT0158990 @ rn6
Intron Retention
Gene
ENSRNOG00000021931 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:RGD Symbol;Acc:1308324]
Coordinates
chr14:23507628-23509352:+
Coord C1 exon
chr14:23507628-23507756
Coord A exon
chr14:23507757-23509289
Coord C2 exon
chr14:23509290-23509352
Length
1533 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
TTTATTTTTTTCTCCCCTAGTGC
3' ss Score
10.71
Exon sequences
Seq C1 exon
CCTCTCGGCCCCGCCCCCTTCCCTGCCTCCCTGACTTGCTGCAGTCTCTCGGAAGGCGATGGAGCGGTCTGAGCCGTTGGCTGTGCTTTCCTGTGAAGAAGCGTCCTGCTCCTCCTGGGGAGCCTGCGG
Seq A exon
GTGAGAGGCCTGGCCGGGACAGGCTGGGCGGGAAGAAGCGGAGGAACGCGGACGAAGGCTCCGTTCTTGAGTTCCGGCGGCTCGGAGCGCGCGGAGGCCACGGGGCAGCTCGGAACCACAGGGAGCAAGGGAGCGGGCGAGCGGGCGGGCGAGCAAGCGAGCAAGCGAGAGAGCTGGCGGGCGGTGGGTGTGGCGGCGTGGGCGCTGGCCTCGCCGCTCGCGCTCAGCCGAGGAGACTCGCTCTTCGCGGTTGCCGGTCGGGTCCAGCATCCTTCCCTCAGGTCATCACTTCTGACCGGCCTGTTAGGAGAGGGTTGTGGCCCCCGTTGCTTGGCACTCTTCCTTTAGGCAGCTTCAGCGCCACGGTGCATTTTCCTCCTGCAGCCGTGCTGCTTAGAAAACTGTTTTTGAGAGCACAAGTCAGAATCAGTTGCAGTCTGGACGCCCGAGAATCCCCCTGTTTACTACGGTGATGTTGGGGCGCTGGGCGGAGCCCAAGGTTCCTATGATTATTTCCCGCTGAGGAGCTTGGAGTTTTTCTTTCCCAGCCTGCAAAATTACGGGGTTGGGGTCCTGGTATACTCTCACCAGTGTTTCCGTTCGTTCCCTGTCAGTTGTCTTACAATTAAGAAAGCCCCACTTGTATCCTGCCCAGTGTTTACATACTAAATTCCAAATATAGAAGTGATGGATTTATTATGTTCATTTAACATCCATTAGCTTTACATTGCACACTGAAGCGGATGCTTCAAGGACTGGATGGAAGTATTGTCTGCCCAGGCCAATGCTGCTAAAATCGACTTAAATATTATTGAATACAAATAACCGCCCTTTAGTTGGAGCTGACGTATTATTTCATAGATTTATTATTATTATTATTAATTACTATTTCTGAGGCTGGCTCCAAGTTTGCCAAAGATGGCTTACAACTCCCATCTTCCTCCCTCATCGCCTGAACTTCTGAGATTACAAGTGTGTGCAATCAGGCATGACTGTTTTGGAACATATTCTTGAACCAATCAGTGAGACAGCGTTTTGGAAAGTAAGTGTTGGTCATAGCCATTGAGTGGCTGAGTATAAACCAGTTCTCATTTCTAATCAGAAATTTAATCCACCAAAGTAATTGTGTGTAAAGTAGGACAGCAAGTGAAAGTGTCGTAGAAGCAAGAGGATAGGAGGTGACAAGGCTATAGATAGCTGTAGTGTATGTTGTATGGGTATGCAGATTTTATTACATGGTGCTTAGAGTGCAGTTCATGCCGGGATGCTCTAAGATCTCAACAGCAAGCGCTCTTCAAGGCAGCAATTAGTGAAATTAACTTCAACACCTTCAGAAGGTTATCCGTGGCCATAGTTCCTGGGTGTCTCGAAGGAAGATGATAACTAATAAAACATAACATTTTGTATAGAAGGACCTTTAGTAATTTGTGAATCTGGTCTGGTGCACAGTTGAATTACACGCATTATAGAGTATGAATATTTAAAAGCCATATTTGCTCTGTAATAGTTTGGGTTTATTTTTTTCTCCCCTAG
Seq C2 exon
TGCAAGTAAAAATTTACCTACCATGACAACAGAATCTTTGGAAATCGATGATGGATTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021931:ENSRNOT00000037509:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]