GgaINT0073692 @ galGal3
Intron Retention
Gene
ENSGALG00000007590 | MTMR8
Description
NA
Coordinates
chr4:11723279-11725433:+
Coord C1 exon
chr4:11723279-11723413
Coord A exon
chr4:11723414-11725300
Coord C2 exon
chr4:11725301-11725433
Length
1887 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TCTTCCTTTGAATTTGACAGTTA
3' ss Score
6.5
Exon sequences
Seq C1 exon
GCTGCCATATGTCGTTGTAGCCAGCCCCTCTCTGGGTTCAGTGCTCGTTGTTTGGAGGATGAACAAATGTTGCAGGCAATCAGAGAAGCCAACCCTGGGAGTCCCTTCATGTATGTTGTAGACACAAGGCCAAAG
Seq A exon
GTATCTTCATGTGGTTTGTGATTACTTGCATCTGTTCTAGCAAGGCTGTTTCCAATTAATTTTCACAACTCCGCTAATGCTTTCTCATGTAGCTTCAGGTTAAATTGTATCAATCTGAAGTGGTGAATTCAGAGTCAGGCTCCTCGTTCTGTCTCTTGATATGGCGAATGCTTGTGAATAACAGAACCATAATGTTAAGTGTTGTTAAGAATGCTTGCACTCCTGGAGTGCTCTAGGTTGAGATTTGTGTTAGGGATGACCTGAAGTGACCAGCAGTCTGGAAGCTGGCTGAGACAGTGAGCCATTCTCAAGATGTGCTCTTGAAACACTGGGTTGGAGAGAAGCTTTCAGAATCGGTTGCGCAACACTGGTGTGCTTTTGTCTGCCTACCTGGGCGGCAGAAATGGGTCTGTATGGAATCTGATAACTATTGAGGCAATTTTTGCCTCAGTAAAAAAAGAAAGTAACACTAATAATCTCTTGATGTGCAGCTTGGAATTTAATACAGTCAGCTATCTGGTTGGTAGCCACTCTCTGGAACTAGAACTTTGTTGTGGTCTTCATGTAAGAGGTTGTTGAAGACACGGGCAAAATGCTATCCTGATCTTGAAGAACTGAATTTAGAAACTAAATCAAATTATTGCCTTGTAATTCTATTGATTGGGAATGTAGATATAAGCAAATTAGGACATAAGCATTTGCATAGCACATGATTAAATATAAAAATCTAACAGTGCTCTGATTTTGCTCTGGTGAGAACTCACTGCATGTTTGGATTTTAGAGTTACTTTAGAGAAACTACAGATATTGTTAAACTGTGGAGAGGGCCTGAAGGGAAAAGTCCTTTGGGGAAAGCAGGGAATGCTTCACCCGTTGTTTTAAGATGCATTTTGTCTTTTTTATAGAATGATGTTCTCTAAGAGATCTCCGTTTAATTACAGAACAGTCTGTTTGTAGCAATCAGTGCATGTTTTTTTGGTACGCACAGCTTCTGGTATCAGAGATGTTCTACAGACATCTGTCCTTGATGGTAATTTTGATAGATTTGGTGAAAAGGAACATTTGTGATTAGCCTCACTTCTAAAGCAACACGTTGTGCCCTGGATGGATAGAACTGAAGCACCAGAATTACTCAGTTACTCCTAAGATGTTCAGATATCACTGTCTTGATTTTTTTTTTTCCCTTCTCTCTTTTCTATGTTAGCAAATCATTGTGTGGGAGGTTGAGGTACTCTTTTTCTTGTCACCACTGAAGATTGTTAGGGTAGCTGTTGAGCAATTTGGGGTGATTATTAACACAACTGGCAGCTTTTCAACTTCTTCAACTTCTTTTCTGCGGTTCCACTCAATTGCTGTATTCTTTTTGCTCAATTTTGATGTTTCTGTGTTTCCCTCAGGTGGCTTTATTTCATCTGTGCATGTATGTCTGTGAAAAGCTTTGGAATTCTCTAACTATTTCTATGCTACCATGTATGTATGTTATTCATAAAGTGGCATTCCTAGTTTTACTTCATTTACTTCTGTCCGAATCTTTTTTATGTGGCTTCACAATAAAGACAGACAGTCTCTTTACCTTCCCTGGTGACAGCAGTCTTTTGCTGCTGGGTCAGGCTTTGATTCTGCCAGGCCTAAGAAGTGCTAGCCGAGGTCTTATTGAATCTCTGCATATGACTAATGAACTGGAGATGCTGACACACACTAAGTAAAATGTCTGAAAGTAACGTGGGGAGGTGGGGAAGGACACCTGAGTAGCAGCTTTTGTTGAGTGTGTGTTCTGGGAGATTAACATCAAACAAACAGACAGACTTGGGAAGCAGACTCACTTATTTTGTGTATTGTTTGTTGTCGTTTTCTCTCCTTTCCATCCTCTTCCTTTGAATTTGACAG
Seq C2 exon
TTAAATGCCATGGCCAACCGAGCTGCTGGGAAGGGTTATGAGAACGAAGACAATTATGATAACATTCGCTTTAAATTTATTGGCATTGAAAACATCCATGTGATGCGGAGCAGCTTGCAGAAACTCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007590:ENSGALT00000012271:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATATGTCGTTGTAGCCA
R:
CAGGAGTTTCTGCAAGCTGCT
Band lengths:
262-2149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]