MmuINT0101996 @ mm9
Intron Retention
Gene
ENSMUSG00000021987 | Mtmr6
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60908380-60910963:+
Coord C1 exon
chr14:60908380-60908514
Coord A exon
chr14:60908515-60910830
Coord C2 exon
chr14:60910831-60910963
Length
2316 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TCTAAAATTTTGAATTTTAGCTC
3' ss Score
6.64
Exon sequences
Seq C1 exon
GCTGCCATTTGTCGATGTAGTCAGCCATTGTCAGGCTTCAGTGCCAGGTGCCTAGAGGATGAGCATTTGCTTCAAGCCATTAGTAAAGCCAACCCAGGAAACCGCTACATGTATGTTGTGGATACCAGGCCCAAG
Seq A exon
GTATGTATCCAGTACTTTGCAGTCAGTTATCTTTATTGTTTCATGTCTTTAATTAATGGGAATAAATATATTTGCCCAAAAAGAACATACTTAAATTGTAGTTTTAAATTAACCAAGGCTAATGCTATAAAGAAAATCTGTTCTTTGAGGGATACTAAAGTTCTCAATGCCCTAGGTCATAATTTCTTGTCTCCTGATAATATATACGTATATTTATGCATATGTGTGTGTATGTATAGATATATATTTATATAACACACACACACACAAACGGACAAATGGAGCTATGTTTTCTTTTTTGTTATTGTTTGGTTTGGTTTGGCTTGGTTTTTCATGATGGCTTCACTGTATAGCTCTGGCTGATGTGAAACTCACTCTGTGGACTAGGCTGGCCTAGAATTCAAAATCCTCCTGTCTCTGCCTCCAAAGTGCTGGAATTAAAGATGTGGGCCACCACACCTTGCCACATATGGAACTCTTGAGGATGTATTAAGTCTTATGTTATTGTGAAGAAATACTAGATAGTGTATGATGTAAATACTTAAAAATTCCTAATACCTCCTCTCTCTCCCTTACTTTCCTTTTTGTTGTTGATATTTAGTTTCTTTGTGACAGGATCTCATGTAGCATTTGTACTGTGTAGCTAATCCTGATCCTCTGCCTCTGTCTCCCAAATGCTAGAATTATAGGTAGGCACCACCGCACCCACCTTACTAGTCTTCATTAATAAAACTGTTAATTAACAAAACACTTTGTGTTAAAGTAATTTGGCCATAAAGTGAAAGATTTAAACAAAAGAGGAAACAGTTACTGAATGAGGAAACTGAATTAGAGAACTGTAATGAACAGGAAATTGCTGTTCTCCTGGTGTCTGTGGTACAAGGCTGAATTCTTATCTTTGAGACCAAACCAGAATCCGTACTTCTTTTTATATGCACAGTAGACAGCTGATTCACATAGGACCCTGAAATTAGAGTAATTACAATCTTCAACGGTGAGAGCTAACTTTATTTTGATTTTTATTATAGCATCGCATGCAGAGCTGGTGGGATACACAAAAGGACATTGGCAGAATTATAGTGAGGATTTCTTCAAAAATCTGGAATGATGAGAAAATAAGAGAAAGCGATGAGAGAAAGCGAGTGAGCACTGTAGACCGCTTGTAGGCAGTACTGTGAGAGGGACCAAAGCTGTTGCAGAGTGATTGCCATTCACTGTGCGGTCTCACAAAAGACTGGAGAACACAGACGATGAGAATAACTCGAGCAAATTAGAAAGCATCAAAAATTAGGACTTGCTATTGATAATCTAAGACTCAAGAGTTGGTAATGTCTCCTAAGAAAAGTTGTGTTCCCTTGTTACTAGAGGCTTATAAGCTAATGATTCTTTTTTAGGTGATATTGTACGTAAGAGGTGATCGTATCTGACTGTGATTGTAGCTCAAGACTTAATAGTTTTTAATTCACATAATTGTCATTGATACAGAAATTTTTTTTACTTACTATTCTAAGTTTAAAATTAAATAGTAGTAATGTGGACACATTTTTAATTTTACTTCAAATTTTATTTCAGGGTGGGTAACTTTTGAGCCAGCAGGTACAATTCACCTGTACTTGCTACCAACCAAAGGTCCATTCACTGAATAAAAATCTACTTCCACCCATGGATCATTTTCTTTATCCACACTCACTCATATGAAAAGAATAGTAATTATAGTAAATACTACATGCAAGAAGCCAGCAAGCCAAATCTTAAGGGTGTCTCAGATCAGTGTCTGTTCCCCTCTGGAGAGCACTTTATGTTAGGCACAGTTCTTGGAGCTGTGCTAGGCTGGTGGATGATGCTGTACACACACAGAGCTGTGGGACAGTCTGGCTCTCCATGGATGAGCTTGGTGGCGTAGACTGTGGTTCACCTCTGGCTCTCAGGGCCCCTCTGGTTTGACCTCACAGACTGATTCTATAAACTGAGCTTTCCAGCTCTGCCCACCTCCAAATCCAGATTTATACAGGAAACATTCCTTTTTAATTTTGAGATGTCACAGAAATGTGAAAAGCTGATGAGAAAGTACTTGAATTATCTTTTTGAATTTTGAGTCTTGTTTGGTTAGGTTTTCTCTGTGTAACAACCACAGTTCCCTGCACACTGCCCTTCTGGGAGTGGCTAGTTTGCTTAGTAAAAGATAGTAGCTTATTCACTTTTGATGAGTTTCTTTAAATGTTGTCCTGCCTATAAAGTGTGACTTAGTGTTTTTATGACATTTTGATAAATTAAAGATAAAAATAACTTGTAAATTTCTAAAATTTTGAATTTTAG
Seq C2 exon
CTCAATGCAATAGCTAACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCTAATATTAGATTTCAGTTCGTTGGAATAGAAAATATTCATGTCATGAGATCCAGCCTTCAGAAATTACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987-Mtmr6:NM_144843:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: