DreINT0098736 @ danRer10
Intron Retention
Gene
ENSDARG00000016794 | mtmr6
Description
myotubularin related protein 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5557]
Coordinates
chr24:24903994-24904341:+
Coord C1 exon
chr24:24903994-24904128
Coord A exon
chr24:24904129-24904208
Coord C2 exon
chr24:24904209-24904341
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
ACCTTTTGTTGTTTTTGCAGTTG
3' ss Score
9.86
Exon sequences
Seq C1 exon
GCAGCAGTGTGTCGGTGTAGTCAGCCTCTTTCTGGCTTCAGCGCTCGCTGTTTGGAAGACGAGCACATGCTTCAGGCCATTAGCAAAGCCAATCACAACAGCCGAAATATATATGTGATGGACACACGACCTAAG
Seq A exon
GTACAACATCATGGAGGTTATTCTTATTTTTTGGTAATCATTGAAGTAATCACAGCAGTCACCTTTTGTTGTTTTTGCAG
Seq C2 exon
TTGAACGCATTGGCAAATCGAGCGGCAGGGAAAGGATATGAGAATGAGGACAATTACTCCAATATCCGCTTCCAGTTTGTGGGCATTGAGAACATCCATGTTATGAGGGGAAGTTTGCAAAAGCTTCTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016794:ENSDART00000005845:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTGTCGGTGTAGTCAGC
R:
CATATCCTTTCCCTGCCGCTC
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]