HsaINT0106299 @ hg19
Intron Retention
Gene
ENSG00000139505 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:7453]
Coordinates
chr13:25832698-25835940:-
Coord C1 exon
chr13:25835806-25835940
Coord A exon
chr13:25832831-25835805
Coord C2 exon
chr13:25832698-25832830
Length
2975 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
TCTAAAACTTTTAATTTTAGCTG
3' ss Score
6.12
Exon sequences
Seq C1 exon
GCTGCCATTTGTCGATGTAGTCAGCCACTCTCTGGATTCAGTGCCAGGTGCCTGGAGGATGAACATTTGCTTCAAGCCATTAGTAAAGCCAATCCAGTCAATCGCTATATGTACGTCATGGATACCAGGCCAAAA
Seq A exon
GTATGTATTTTAAATACAGTACAGTCTGCTAGTTTAATTATTTTTATTACTTTACTTAATGAGAGTTAATAAACTTGCCCATATTTAAAATATCTGAATCCTAGTTTTAAATTAACTAAGGCTAATGATACTAAGGAAATCAATCCTTTATTTAAAGGATACCAATTTAGAAAACCAATTTCTGAGTAACTCATGGTGATTTCTTACATCTTCTGATATATATAAATTCAGGAAAGCTGAATTGTATATTGAGAACTCTTGCTAGTATATAAGTCTTATGTTATTGTGAAGAAATAATAAAATGTGTGTTATGAAAAATAAATTGTTACTATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGACAGAGTTGCACTCTGTCACCCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGTTCAAGCAATTCTCCTGCTTCAGCCTCCTGAGTAGCTGGTATTACAGGCACGTACCACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGACCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGATCCGCCCACCTCAGTTGGCCTCCCAAAGTGTTGAGATTACAGGCATGAGCCACTGCGCCCAGCCTAAATTCTTATTATTCTTTTTTGAAGAATTTTCAATTGACAAAACATTTTTATGCTAAAATAATGGATTTTAGCTTGAAATTTTCAAGAAAATAAGGAAAACAGTTAACTTAGGAAACATTGAACTAGAGAATTTTAAATAGTGAACAGGAATTTGGGTTATCTTAGGCATCTTGTGTGCTATGGGGCCAAATTTTTATCATTGGGACAAATTTCAGAGTCCCTTCTTCTTTTTATTAACATAGTTAAACAACCAGTTCATATAGGATCCTGAAACTAAAATAATTAAAATCCTCAGTGGTAATAGCTAACGTTACTTTTAATTTTTGTTATAGCGTCGCATGCAGAGCTGGTGGGCTACACAAAAGGACATTGGCAGAATTATAGTGAGGATTTCTTCAAAAATCCAGAATGATGAGAAAATAAGAGAAAGCAATGAGAAAAAGCGAGTGAGCAATATAGAACGCAAGTGGTTTTTAGGCAGCTTTGTGAAAGGAATGGTCACTATTTTAGAAGTGATTCTCATCATTATGCAATTTCACAAAAGATAATTTAGAAACCAGAAGAAGAGATTAATTTGAGTAAATTGTACTTTGGGAGGCCACGGCGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGTCTGACCAACATGGAGAAACTCTGTCTGTACTAAAAATACATAATTAGCCGGGCATGGTGGTGAATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCGGAGGTTGTGGTGAGCCGAGATCACGCCATGGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAGAATTATCTGGCTGGACATGGTGGCTCACACCTGTAATCCCAGCACTTTGGAAGGCTAAGGTGGGTAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCAAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGTGCGATGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATTGTGCCATTGCACTCCAGACTGGGTGACAAAAAAAAAATTAATAATTATTTAAAAATAGAAATTGATAACTTGATAATCTTTTATTAAAAATAAAAGACTTTATTAGGAGTTGAGAGTGTTGGTGATATCTCATAAGAAAAATTCTGGAACACTTTTTTGATAATATTAGATATAAAAGGCGATTGTAATATGAGACTTTTTGAAGATGAGGTCTGATACAGTGATTTGTTTTTCAGGACCTCATAGTTCTTATTTGTATAATTATCTTCTTCACAGAAAATATATCATTCTTTGATTGTTTTACTAGTTAAATGTAACTCAAGTAGTAATAATGTGGAAGCATTTTTTAACATCTAACTGTAGATTTTACTTTAGGTACCGAATAACTAGTGAGTCAGTAGGATACAATTTAACTGTACTTGTTACCAAACTGAGGTCCAATCCACAAAATGAAGAGCTCCTTTTCTTCTAATTTAGGCTTCGTTTTATCCACGTTCATAAGAATTTTTAATAAATTGTGTTAACATACTATATGAAATCCTAGCCTGGAAGAATTAAGCATGACAAATCCTAAGGGACCACTGACAACATTTTGATCTAATAGCTAAAGACCATGGGCATATGAGCAATCTGTTTTTTCCTGGAGACCAGTTTATTTTTGGCCCAATTCTCAGAGATGTATCAGGATAGCCGATTATATGCCATATTATATGATGTATGGGCCTCCAATAATCTCTCATATAATCTCCCTCAAGTAATCTGAAGCATATTTCAGATCTGATTTTCAGGTCCCTATGGCTCTCAGAATGATCAATGCCCTAGGCTTGTTCTGAAGTAAACTCATAGGTTCATTCTGTAAAAGGAAAGTCCCCCAGCCAGCTCTGCTCAACTGAATCATTTAGAAATTAGATAGGAGACATTTCTTTCTTTTTAATTTTAAAATATTACAAACATATGGAAACTGCCTAAAATATAAATGAATTGGTTTCATGAACTTATGGGAACTTTGACCTTTCCATTATATAGCAATCGTATTACTTTATTATCTCCTTCATTACTATTTAATAATGTGGCATTTTTACTTACTAAAAGATGAATGGTAGCTTATTCAGTTTTGATGAGTTCCTTTAAACTGCCTCCTAGCTAAAATACTGCTTATTTAATATTTTCATGACATTTTGGTAAATTAAAAAAGTAATTTGTCTCTAAATTTCTAAAACTTTTAATTTTAG
Seq C2 exon
CTGAATGCAATGGCCAACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCCAATATTAGATTTCAGTTTGTTGGAATTGAAAATATTCATGTCATGAGGTCCAGCCTTCAGAAATTATTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139505-MTMR6:NM_004685:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)