GgaINT0115694 @ galGal3
Intron Retention
Gene
ENSGALG00000017112 | MTMR6
Description
NA
Coordinates
chr1:181396224-181397697:+
Coord C1 exon
chr1:181396224-181396358
Coord A exon
chr1:181396359-181397564
Coord C2 exon
chr1:181397565-181397697
Length
1206 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TTTGATTTTGTTCTTCTTAGCTT
3' ss Score
7.18
Exon sequences
Seq C1 exon
GCTGCAATTTGCAGATGCAGCCAGCCTCTCTCAGGCTTCAGTGCCAGGTGCCTGGAAGATGAACACATGTTGCAAGCAATCAGTAAAGCAAATCCTTCAAATCGCTACATGTATGTTATGGACACCAGGCCAAAG
Seq A exon
GTAGGTAGGTCTGCAGACTAGCCTCTCTTCCTGCACGTTAGAACACTGAGATAACTCTTAATCTTCCTAAGTTGTACATTAAATATGGCTATATTGGCTATTCCTTAAAGGTAAGGATGAGCATCAATATTCAAGTGATTAAGCACTTGCTTTTTTAAATAAGTCTAAATGTATATACATGATCAAGTTGATGGTTGGACTTGAGCTTGAAGGTCTTCTCCAAGTGAAATGATTCTATGTAGGTCACTCCGAAAGTAATGCTTCCTATTTATTTTCATGGAAACTACAACAGATAGAAAGGGAACAATAGCACTCAGCTACAAAACACTATTTTTCGGTGTAGGCACCACCATTAGCTATGCATTTTGGCCAGTGATAAACAAGAGCCTGCATGCTGCACTCGTTTAAAAATGTATATACGTGCACGGCTGTCCAGAATGTGTTTTGCTTCTCACACTGTTATCACTGCTGAAATGTGCCACCCACCACCTCACTGTACTCACACCCAGTATTTGGTCTCCAAAAATGTTCAGCAAAGGTCAATGAATGTCAGTGAATGCATTTTTTTCCATGTAGAGAAATTCAATAACACACTTTTGTTTCATATGCACTTCTGTGTCAGGCACCATTTTGTCAACCTGCCCCTCTGCTGCCATCTGTGACGCAGCAATAAAATATAACAGGATATTGGTGGGAGTGTTCAGCCTCTACTGCCATACCACCAACATCTGCCTCTGATGTTATGGGCCAACATAATAAAATAGGAGGCATTATTTTTGGAGCAGCCTTTGTATGATTCTATAATTCTGAGTATGTTAGTGATTTATTTTTTTTAGGGAGGTGCATTTATAGTATACTTAAAACTCATGTAAGAAATGAGTAGTCAGAATGAGATCCAAGCTGTTTTAACAGCTAGGAATGAAATTTTTTTTTTATTAGGTTTACTGCTGGGGGCACAGAGGAGAGAATAGGAAAATCTCAAATGTGTTGTTCAGATGTCAGCTTTGAATGTAGACTTCACTTTCTGTGTACTATGCCTTGCTTATACTTGAATGTTGAACAAACTGTTAGTTTTCTAGACGTGATTCACTGTATGTGCTCTTGTGTGCTTTTTGCCCCGTGTATTCCACTGAAATTGCATGATTTTAGTCCCTAATTTGACATTTTGAGTGCTGATTTTCAATATTTTGATTTTGTTCTTCTTAG
Seq C2 exon
CTTAATGCAATGGCAAACAGAGCTGCTGGGAAGGGCTATGAAAATGAAGACAACTACTCTAACATTAGGTTCCAGTTTGTTGGAATTGAAAATATTCATGTAATGAGATCCAGCTTACAAAAACTTCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017112:ENSGALT00000027648:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCAGCCAGCCTCTCTC
R:
TCCAGAAGTTTTTGTAAGCTGGA
Band lengths:
254-1460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]