RnoINT0095402 @ rn6
Intron Retention
Gene
ENSRNOG00000012918 | Mtmr6
Description
myotubularin related protein 6 [Source:RGD Symbol;Acc:1305378]
Coordinates
chr15:40584527-40587076:+
Coord C1 exon
chr15:40584527-40584661
Coord A exon
chr15:40584662-40586943
Coord C2 exon
chr15:40586944-40587076
Length
2282 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TCTAAAATTTTTAATTTTAGCTC
3' ss Score
7.26
Exon sequences
Seq C1 exon
GCTGCCATTTGTCGATGCAGTCAGCCATTGTCAGGCTTCAGTGCCAGGTGCCTAGAGGATGAGCATTTGCTTCAAGCCATTAGTAAAGCCAACCCAGGAAACCGCTACATGTATGTTGTGGATACCAGGCCCAAG
Seq A exon
GTATGTATCCAGTACTGTACAGTATGTTATCTCTATGATTTCATGTCTTTAATTGAGAATAAAAGCATTTGCTCAGATATAACATACCTGAATTGTAGTTTTAAATTAACCAAGGCTAATGCTATGAAGAAAATCTGTCCTTTGAGTAATGCTAAAGTTTTCAGGGCCCTTGGTCATCATTTTTTTTCTGTCTCCTGATATATAGATTATATACATGTATATGTATGAATATATGTAAAAACATATCTACACACACACACACAGACAGACAAATGGAACTGTTTTCTTTTTTTGTTGTTTGGTTTGGTTTTTCATGATGGTTTCTCTGTGTAGCTCTGGCTGTCATGGAACTCACTTTGTGGACTAGGCTGGTCTCGAACTCAGAGATCCTCCTGTCTCAGCCTCCCAAGTGCTAGATTAAAGATGTGAGCCACACACCCTGCCACATCTGGGACTCTTGACAATGTATTAAGTCACGTTATTGTGAAGAAGTGCTATGATAGTATATGATGTAAAAATTAGAAATTCTTGCTACCCCCCTCCTTTACTTTCCTTTTTGTTGTTGATATTTAGTTTTTTTGTGACAGGATCTCATGTAGCATTTGTACCATGTAGCTAATCCGGATCCTCCGCCTCTACCTCCCAAATGCTGGAGTTACAGGCATGCACCACCACGCCCGCCTTTTTATTCTTCATTAACAAAACTGTAAATTAACAGAACACTTCGTTTTAAAGTAATTTGGCCATAATGGGAAAGATTTGAAAAAAAGAGGAAACAGTTATTGAATGAGGAATCTTTGAATTAGAGAACTGCAATGAACAGGAAATTGCTGTTCTCCGGCGTCTGTGGGGCAAGGCTGATTCTTACTATTGAGACCAAACCAGAAGCTGCACTTCTTTCTTATGTGCACTGTAAACAGCTGATTCACATAGGACCCTGAAATTAGAGTAATTACAGTCTTCAACGGTGAGAGCTAACTTTATTTTGATTTTTATTATAGCTTCGCATGCAGAGCTGGTGGGATACACAAAAGGACATTGGCAGAATTATAGTGAGGATTTCTTCAAAAATCTGGAATGATGAGAAAATAAGAGAAAGCGATGAGAAAAAGCGAGTGAGCACTGTAGAACGATTGTAGGCAGCACTGTGAGAGGGGCCAGAGCTGCTGCACAGTGGTCGCCGTCACTGTGCAGTCTCACAAAAAAGATGAGAGTAATCGGAGTAAATTAGAAAGTATCTATCAAAAATTAGGAATTGGTATTGATAATCTAAGACTCCAGAGCTGGTACTGTCTCATAAGAAAAATTGTGTTCCCTTGTTACTGGACGCTTGTAGGCTAATGACTCATCTTTAGGTAATATTATTCATAAAAGGCGATTATAATGCATGCATTTTGAAGCTGAGGCCTGACTTATAGTTTTTATTTATATAATTGTCATTGATACAGAATTTTTTTCACTTGCTCTCCTAAGTTTAAAATTCAGTAGTAGTAATGTGACCACATCTTTAATTTGACCTCAGTCTTCATGGATGGCTGGTAACTGTTGAGTCAGCATGTACAGTTCACCTGTACTTGCTCCCAACCAATGGTTAATTCACTTAATGGACAGCTACTTCACCCAGCCTAGGCCATTTCTTCATCCACGCTCATATGGAAAGAACAGTAATCAGAGTAACACACTATATGACAGAAGCCAGCAAGCCAAACCCTAAGGGTGTCTCAGATCATCGTCTGTCCCCTCTGGAGAGCAGTTTATGTTGGGCACGGTTCTTGGAGCTGTGCTAGGCTGGTGGATGATGCTGTGCACACAGCTGTGGTACAGTGCTGAGTCTCCATGTGTGAGCATGGTGGCGTAGAGCCGTACTTCACATCCGCTCTCAGGGCCCCTGTGATTTGATCTCACAGACTGATTCTGGAAACTGAGCTTTTCAGCTCTGCCCATCTCCAAATCCAGATTTAGGCAGGAAACATTCCTTTTTCATTTTGAGATGTCACAGAAACGTGGAAAGCTGATAAGGAAGTAGTTATCCTTTTGAAGTTTGAGTGTCCTCGGTTTGGTTTTCCCCTGGGTAACAAACACATTTCCCCACACACTGCCCTTCCTCACTGCTGGCATAGATATGGCAGGCTTGCTTACTAAACAGTAGTAGCTTATTCAGTCCTGATGAGTTTCTTTAAATGTTGTCCTTCCTATAAAGTGTGACTTAGTGTTTTTATGGCATTTGATAAATTAAAGATAAAATTAATTTGACTGTAAATTTCTAAAATTTTTAATTTTAG
Seq C2 exon
CTCAATGCAATGGCTAACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCTAATATTAGATTTCAGTTTGTTGGAATAGAAAATATTCATGTCATGAGATCCAGCCTTCAGAAATTACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012918:ENSRNOT00000065328:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(19.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]