BtaINT0096138 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003116 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr12:34186586-34188936:+
Coord C1 exon
chr12:34186586-34186720
Coord A exon
chr12:34186721-34188803
Coord C2 exon
chr12:34188804-34188936
Length
2083 bp
Sequences
Splice sites
5' ss Seq
AGAGTATGT
5' ss Score
5.66
3' ss Seq
TCTAAAATTTAAAATTTTAGCTG
3' ss Score
5.38
Exon sequences
Seq C1 exon
GCTGCCATTTGTCGCTGTAGTCAGCCACTGTCTGGGTTCAGTGCCCGGTGCCTCGAAGATGAACATTTACTTCAGGCCATCAGCAAGGCCAACCCAGCCAACCGCTACATGTACGTCATGGACACCAGACCCAGA
Seq A exon
GTATGTGTCCAGTACAGCCTGGCAGTTCACTGTCTCTGCTGATTCAGTTAGTGGGAGCCGGGCGCTGTGTCCATGTTGAACATGCTGAATCCTAGTTTTAAATGAACTGATGCTAAGGAAATCAATCTTTTACAGGATACCAACTTAGGAGACCCAGTTCCTGGTAACCCAGGTTGTGATTTTTTATGTCTTCTGACACATGTACAAGTTTAGGAAAGCTGAATTTTATATTGGGAGCTCTAGGTGGTGTATCAGCATTACGTTATTGTGAAGTATATTGTGAAAATTAGAAATTCTCACTACTTTTTTTTTCATCGAATTTTTAATTGGCAAAACACTTTGTTAAAATGACATTCCTTAATATGGAATATTCAAGAAAATAAGGAAAATAGTGAGCTAACTTAAGAAACATTGAACTGGAGAACTGAACTAGTGAACTAGTTGAACGTTGAATGTTGAACTAGTGAACAATAAACAATTGTTCTGTTAGGTATCTATCATGTCAGGATAAATTTTTATCTTTGGGACAAATGTCCGAATCCCTTTTTCCTTTTGTCAATGCAGTAAAACAACCAATTCATGTAGGATCCTGAAACTAAAATAATTCAAATCCTCAACAGTAATAGCTAACATTACTTTTAATTTTTATTGTAGCATCGTGTGCAGAGCTGGTGGGCTACACAAAAGGACATTGGCAGAATTATAGTGAGGATTTCTTCAAAAATCTGGAATGATGAGAAAATAAGAGAAAGCGATGAGAAAAAGCGAGTGAGCGATACAAAACACAATTTTAGGCAGCTTTGTTGAAAGGAATCGTAGCTATTTTAGAAGTAATTCTCATCATTATGCAGTTTTACAAAAGATAATGGAGAAAAAGAAGAAAAGAGTAATTTGTGTAAATTATTAAAAGTTAGAGATTGATAGTTTGATAATCTTTGTTTAACAAAAAGAGACTTTCTTAGAAGTCAAGAGTGTTGGTGTTATCCCTTGTAAGAAAAATTTTGATTTACTTCCCAGTATAATTTGAGTGGGTTAATTGCATAGCACTATTTTTAGGTAATATTAGATATAAAGGATGACTGTAATTTAAGACTTTCTGAACATGAGGTCTGAGGGTGATTTGTTTCTCAGGCTCTAATATCTCTTATATAATTGATGACTACACAAAAAATGTATATCTTTATTTGATTGTTGTGTTTTCCTAGTTAAACCCGAGTAGCAATAATGTGGAAGCATTTTTTAAATATCTAAGTCTTGCCTTAGTTATCATAGATCCCAAGTGACCAGTGAGTCAGTAGACAGTGTAACTGTACTTCTCACCAACCTGAGCCCCTGTCCACTGCAAGAAAAGCAGCTTTCTCTTCCAGTTCTGTTTCATCCAGCTCCTTAAGACTGTTGACAAATGTCATAACATACCACAGGAAATCCCAGTCTGAAAGAATTAAACATGCCAGATATTAACTTCTGAGAGCATTTGATCTAATAACCTAAGACCATGGCCCATAGGCGGTCTTTTCTCCCTAGAAATCAGGTTGTTTGGGGCCCAGTTCTTGGAGCTGTATCAGGCTGTCTCATTGCATACTGTGGGTGTACTGTGTAATCTGATCCCAAGTGACCTGACCTATGTTTCAGCTGTGCTTCAGGGTCCCTGTGGCTTTCTGAGTGATCAGGTGCTCCAGGCTTTTGAAGTGAGTCTGAAAGTTCATTCTGTAACAGCTCTGCTCAACACTGAATCGTGTAGGGTTTAGATGGGATATAATTCTTTTATAAATTTTGAAATACTACAAACATATGGAAGACTGACTAAATACACATGTGAATCAGTTTCATGAATTATGTGTAGGGAATTTCTTATCTGATCCTTATGTAGCAAGCGTGTTGTTACTTTATAGGATCCTCTGTACTTTGAATAATATAGATGATACTTTTCGATTATTAAAAAATGGTAGCACATTCAGTTTGATGACTTCCTTTAAACTCTGCTGGCTAAAAGGTGGTTTATTTAGTGTTTTCATGATATTTGGTAAATTAAGTTAAAAGAGAAAGGCAATTTGTCTCTAAATTCTAAAATTTAAAATTTTAG
Seq C2 exon
CTGAATGCAATGGCCAACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCTAATATTAGATTTCAGTTTGTTGGAATTGAAAATATCCATGTCATGCGGTCCAGCCTTCAGAAATTATTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003116:ENSBTAT00000004052:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development