GgaINT0073932 @ galGal3
Intron Retention
Gene
ENSGALG00000011982 | PDE5A
Description
NA
Coordinates
chr4:56244364-56244628:+
Coord C1 exon
chr4:56244364-56244464
Coord A exon
chr4:56244465-56244550
Coord C2 exon
chr4:56244551-56244628
Length
86 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TCTTTTCACTTGTTTTAAAGGAG
3' ss Score
7.56
Exon sequences
Seq C1 exon
GGAAACCAGATTCTCAGCAGCCTTTCAATTGAAGAGTACAAGGCAACACTGAAAATGATAAAACAAGCCATCCTTGCAACAGACCTAGCACTATACATAAA
Seq A exon
GTAAGTCAGAGACAAGTTTGACTGGTAGTCATAGCTTGATGTTTGGATTGCCAGCACGCTGTAAAATCTTTTCACTTGTTTTAAAG
Seq C2 exon
GAGGAGAGGAGAATTTTTTGAACTTCTAAGGAAAAAGCAGTTTAATTGGGAAGATCCTATGCAGAAGGAGCTATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982:ENSGALT00000019550:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(13.8=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGATTCTCAGCAGCCTT
R:
TCCTTCTGCATAGGATCTTCCCA
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]