RnoINT0108879 @ rn6
Intron Retention
Gene
ENSRNOG00000014443 | Pde5a
Description
phosphodiesterase 5A [Source:RGD Symbol;Acc:620995]
Coordinates
chr2:227017122-227019254:+
Coord C1 exon
chr2:227017122-227017222
Coord A exon
chr2:227017223-227019176
Coord C2 exon
chr2:227019177-227019254
Length
1954 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TTTCTAATTCTTTTTTTAAGGAG
3' ss Score
8.27
Exon sequences
Seq C1 exon
GGCAACCAGATCCTCAGTGGCCTCTCCATTGAAGAATATAAGACCACATTGAAAATAATCAAGCAAGCAATTTTAGCCACTGACCTAGCACTGTACATTAA
Seq A exon
GTAAGTTTTAAGAAGTGACACCCTCTGAAGTAAGTCTTGAAGACGTTCTCATGTTCACACTGGGAAGCCTTTACAGAAGCCAGCGTCCTGACAGAGTTGTTACCAGACTGGCAGTTTTTAAAAACAGGTGGCCAGAGGAGCCCGCTCCATTGCACTTGTGTTGCTACAAATGCTAGCACAAGGCTATGCTCGATGCTCTAGTATTGCTGTCTCTGAAACTCCCTTGAGGCATCATGGTGGATTCCAAAGGCTCCCTATCTACCTCTTTTCCCTCACTTGCTAATTTCTGCCTGTTCATGATTCTTTTATATGGCCACCAAGCCTCAGGGGGCAGGCAAAGGACAGTGAAAGCAATCCGGATTTCAGGAATGTTAATGTAGAACTGTGAGTGTTAACGCAGAAGTCGAATGTCTACATCAGGCACACACACACAACATCCACTGCTCACTGTCTACCAATGTATATGTGTCTGCTTCCTTGAAATTTGGGTCAGTTTAAGGGGAATCAGAACAGAAGAAAATAGAGCAAAGTTCAGGTTGTAGAAAAGTAATTTCAGAGTACGGATCAAAATCACAAAGAACTTGAAGAACAACCCAGTCTGCATAGGCTTCCCGTTTTTATGCCGCATGAGTTTCTCCTCTCTGTGTGGAACTTCAATAGTTAATCATACACGGTCCATTTTATCATGGCCGTTTATCTTTTGTTTGGTCTTGATACTTGATGCTGGGTACAAAGGAGGTCTTTCCCAGAGACACTGGGGACTCTTATGTCTGTGGAGTGACAGGAAATACTATCTAAAACTTGTTCCTCCCTTCCAAAGCATGTCTCATCGTCACTGCCCTTCTTTTAATCTGCAGCAAGATGTGACTGAATTAGAGATCTTAGACGCGCTTACCCCTTTGTGCTTAGGAGATCTTAAATCATTCATGACAATACATTCTAACTCACACTGCTGTGTTTATAAAATATAAAAGGGGGGATATGTTCTATGGAGGTCTGTGGAAAGGGGGTGCCCCTGTGCCCATGCTGAGACATCCCTTACCCTGAGAGACCAGCCACACTACAGTAGAGTATAGAATAGAGTTCATTCAGGGCCTGGGGAGGGGAGTTAAGAGGGTAGTAGGGGGGATGGGAGGGAGGGAAGGAGGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGCTAGTNGAGAGAGGAGAGGAGAGGTGTAGAGCTGTAGATGTGTAGAGGTGCCTGCCATGAGCATGTGGAGAGAAGGGGGATGGGAATGGAGAGAGAGGGGACAAAGGGGAAGAGGGGAAAAGCAAGAGAGAACAAGATGGAGCAAGAGAGTGAGCAGGGGGCAAGCAGCATCTTTTACAGTGCCAGGCATACCTGGCTGCTGCCTGGTAACTGTGGGGGTAGAGCTTAGACAGAACGCTAACACACAATATTTTGGTTTTTTTAATAAAATAAATTATATAATTAAATAATTTTTAATTTATTTAATTAAATAATTTAAAAATTATTTAAATAATTTAAAGTTAATTAAATAATTTAAAGTTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAGAACCAAAAAAAAAATAATAATTTAAAGTTAATTAAATAATTTTAAGAAATATTTAATTGAATAATTTAAAGTTAGTTAAATAATTTTAAAAATTAAATAAAAAATTTTCCTGATTCGAAATTGCCATTAGTTATAAGCAATAGGACATTGAAGGCGGGATACTGAGTGTGGATGAAGCTTTGCTGTCGGGTTCTGCGATGTGGACAGTAGAGGTTTTCCTCTGGTAGGAATCCCACGAGTCTTGTAGATCACGGGAAGAAGAGCTGGGGAACTCACGGTCTCACTGTAATCACTGTGTTTTTTCTAATTCTTTTTTTAAG
Seq C2 exon
GAGACGAGGAGAATTTTTTGAACTTATAAGAAAAAATGAATTCAGTTTTGAAGATCCTCTTCAAAAGGAGTTGTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014443:ENSRNOT00000019638:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(13.8=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]