MmuINT0117016 @ mm10
Intron Retention
Gene
ENSMUSG00000053965 | Pde5a
Description
phosphodiesterase 5A, cGMP-specific [Source:MGI Symbol;Acc:MGI:2651499]
Coordinates
chr3:122839542-122841048:+
Coord C1 exon
chr3:122839542-122839642
Coord A exon
chr3:122839643-122840970
Coord C2 exon
chr3:122840971-122841048
Length
1328 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TTTCCTAATTTTTTTTAAAGGAG
3' ss Score
7.64
Exon sequences
Seq C1 exon
GGCAACCAGATTCTCAGTGGCCTCTCCATTGACGAATATAAGACCACACTGAAAATAATCAAGCAAGCAATTTTAGCCACAGACCTAGCACTGTACATTAA
Seq A exon
GTAAGTTTTAAGAAGTGATGCCCTCTGAAGTAAGTCTTGAAGACGTTTTCCTGTCCGCACTGGGAAGTCTGTAGAGAAGCCAGCGCCCTGACACAGCTGTAACCAGACTGGTAGATTTTAAAAACAGGCAGTCAAAGGAGCCTACTCCTTGGCACTTGTATAGCTACAAATGGTAGCCCAAGTCTATGCATGATGCTCTGCTATGGCTGTGTCTCTGAAACTGCCTTGAGTCATCATGGTGGGTTCCAAAGGCTACCTATTTTCCTCCTTTCCCTCACATGCCAATCTCTGCCCATTCATGATTCTTTGATATGACCACCAAGCCAAAGGGGGCAGGCAAAGAACACTGAAAGTGATCCGAGTTTCTTTTTATTTGACTTTCGTGGACGAATGTAGAACTGTGAATGTTGACGTGGAAATTAAATGACTACAACACACACACACACACACACACACACACACACACACATCCACCGCTCACTGTCTACAAATGTATGTGTGTGTGCTTCGTTGAAATTTGGATCAGTTTAAAGGGAATCAGGCCAGAAGAAAATAGAGCAAAGTTCAGGTTGTTCAAAGGTAATTTCAGAGCACAGATGATCAAATCACAAAGAACTTGAGAAACATCACAGTCTGCAGAGGCTTCCCATTATTATGTCACGTGAGCTGCTCCTCTCTGTGTGGAACTTTGATAGTTGATCATACACAGTCCATTTCATCATGGATGTTTATCTTTTGTTTGGCCTTGTTTCTCAAGATGCCTGATGATGCTGGGTACAAAGGAGGTCTTTCCCAGACACTGATGACCCTTACGTCTGTGGAATGACAGGAAACAGTGTCTAAAACTTGCTCCTTGCTTTCAAAGCATGTCTCATCTTCACTGGCCTCCTTTTAATCTGCAGCAAGATGTGGCTGAATTAGAGACCTTTGACCCTCTTACCCCCATGTACTTCAGATATCTTAAATTATTCTTGCCAACACATTTTAACTCACACTATTCTATGTTTTAAAAATAAAATAAATTATATAATTAAATAATTTAAAAATTAATTAAATAACTAAAATGTTTAAATAAGAAATATCCCTGAGATGAAATTGCCATTATTTTTGATCTGGAGTTACAAACAATGTGACATTTTTTAAAAAGTTTCCATTGTAAGTAAGCCAGGATCAGGAAGGCAGGATGCTGAGTGTGGATGAAGCTTTGATGTTGGGTTCTGAGATGGGGACAAGAGAGATTTTCCTCAATGTGTGCTCCATGAGTCTCATAGGGGAGAAGAGCAGGAGGACTCACTGTAATCACCATGTTTTCCTAATTTTTTTTAAAG
Seq C2 exon
GAGACGAGGAGAATTTTTTGAACTTATACGAAAAAATCAATTCAGTTTTGAAGATCCTCTTCAAAAGGAGTTGTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053965:ENSMUST00000066728:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(13.8=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types