GgaINT0073933 @ galGal3
Intron Retention
Gene
ENSGALG00000011982 | PDE5A
Description
NA
Coordinates
chr4:56244551-56246176:+
Coord C1 exon
chr4:56244551-56244628
Coord A exon
chr4:56244629-56246112
Coord C2 exon
chr4:56246113-56246176
Length
1484 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TTTTTTTTTTTTCTCTATAGAGC
3' ss Score
11.17
Exon sequences
Seq C1 exon
GAGGAGAGGAGAATTTTTTGAACTTCTAAGGAAAAAGCAGTTTAATTGGGAAGATCCTATGCAGAAGGAGCTATTTTT
Seq A exon
GTAAGTAAATGCAGAATGATTAAAAAGCTGATTAATATTAGATGTCTAATTTTCCATGCCATGTTGTCAGGAATTGCATTAAAACCAACCAATCTGTATGCTCTGGGCCTATACAAACTGGTACAGATAACATAGGTCACTTCTAGGGATGGAATTACTAAATTTGCAGCCTGTATAATAAACTGTGTTAAATAGTAGGTGCAGTTACAAAAGCATTCCTATTCCATAGGACCCCTAAGTGCAATGCTCTTTTGCTGTTATATTTAAATATTTAATCGCTGAAACCAATAACTAAAGATTCAGGATAGGCATTTTATTTTGAAGCAGATTCCTTACTGGCACCGGAGGAAAAAAAAAAAAAAAAAAAGAATATTTAAGAACTGAAAAAACTTTATAAAAAGCTACAGAAATACACTGACGTAGGCTGTCTCAGAAAGGACAGTTGCCCTATTTCAAATTCAGTGCTTTTAAAAACCTGTCTCATTTAGTCATGTGGCATTTAATCACGTTTTCCAGTTTCAGTAACTGACCCTTGTATTGTCAATGGAAATGGCAGTCCCTGTTCGTGACAGAAAGGAATGACAGAATTATAGAACTGTAGAATATCCCAAGTTGGAAAGGACCCATGAGGATCACCAAGTCAAACTCCTGGCTCCATGCAGGACCACCCAAAAATCATAACCTATGTCTGAGAGCACTGTACAAAAACTTCTTGAACTCTGGGAGACTGGGGCCATGTCCACTGCGCTGGGGAGCCTGTTCCATGCTCACCACCCTCTGAAGAGCCTTTTTCTAACACTCAACCTGACCCTCCCCTGATAGAGATCCATGCTGTTCGTTCTGGTCCTGTCACTGTCACCAGAGAGGAGAGATCGGTGCCTACCTCTCTGCTACCTTCATGAGAAGCTGAAGGCTACCATGGGGCCACCCCTCAGCCTCTTCTGGGCTGAAGAAACACTGTGACCTCAGCTGCTCTTCACACACCATCCCCTCTAGACTCTTCCTCATCTTCATAGCCCTCCTTTGTATTCACTCTAATAGCTTCAGGTCCTTCTTATATTGTGGCACCCAGATCTGCAGATAGTGCTTGAGGTAAGGCTGCACAGAGCAGAGTGGGACAATCCCTTCCCTCACCCAGCTGGGCCTGATGTACCCCAGGGTACTGTTGGCCATTTTGGTTGCCAGAAATAAGTGTGCTACCTGTCCAGTAGCAAATAGAATGAAGCAGTTCATTTTATGAAAATCCAACAAATGAGTTGGTCCAGATTTGCTCATTTCTGTGTGCTCATTTCATGCAGGTGAAATTCTACCACATCATCAAGCGTTGGATGTCTTTATAACTTTGGTTTAATTTCACTTGTTTTACTGACTTTGATTTTCCTTGAAATTGGATGTTCTATTTACTAATCGCTTGGCTTGGTTGACTGTTATTTCACAGTATAATAATTCATAGATTTCTTTTTTTTTTTTTTTTTTCTCTATAG
Seq C2 exon
AGCAATGCTGATGACTGCTTGTGATTTATCAGCTATAACCAAACCGTGGCCAGTTCAGCAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982:ENSGALT00000019550:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.9=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]