MmuINT0117017 @ mm9
Intron Retention
Gene
ENSMUSG00000053965 | Pde5a
Description
phosphodiesterase 5A, cGMP-specific [Source:MGI Symbol;Acc:MGI:2651499]
Coordinates
chr3:122543889-122546026:+
Coord C1 exon
chr3:122543889-122543966
Coord A exon
chr3:122543967-122545962
Coord C2 exon
chr3:122545963-122546026
Length
1996 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
GTTTCTTTCTCCCTTAACAGAGC
3' ss Score
10.98
Exon sequences
Seq C1 exon
GAGACGAGGAGAATTTTTTGAACTTATACGAAAAAATCAATTCAGTTTTGAAGATCCTCTTCAAAAGGAGTTGTTTCT
Seq A exon
GTAAGTTGGCTTTACTGTCCACAAAAGCTTGTCTGCCTGGTTAATTTTCTCTGAGCAGTCATTAATTGGGATCATTTGTTATGTATAATGACTTTTGAGGTTGTCAACTGCTCCCAAGTGGAATATGAAAAGTTGAATGTGGTCATTGGCAAGGAAGGAAACTGACAGTTGCCTTGCTGAAGACTGACACTGTAAGGAAGTGGAACATTTGTGGCTCAAGATTAGTGTTTTGCTTCATGTCTCCCATTCTTTGGAATGGAAAAGGAAATATTAACAACCTATAGGTTGTGAGAACAAGATGGTGGCTGCTAATGTCATTGCTCTTGGGCCACAGCACAGCAGTGCTTTCCAGTGGACCCGCCAAGGGGTCCATGTTTCCACCTCAGTACACAAATTCCTTTCTTCTAGCTGCAGATGATAGCTCTTCTGCTACTTGCCTCTGTCTTTACCTTGGCAATAACTTATATCAGGAAAACTGAACCAGGAAGGCACAATAGTCCCTGCACTTGGAAGGATGAAGGAAAATGATTATCACAAGTTCAATGCCACCCAGAGATATAAATTCTGAGGCACTGTCTTAAACAATAAAATAAAACACAACAAAACGACAGTCAATAACTAATGGTCCCGCAGATTACAGATAGTGTTGCTACAATGCCAATGTCGACATTTAAAAAAAAAAAAAAGATTGGGATTGCTTAGTCTGCAAAGCAAATATGCAAATTAAAAGGAAACAACATATAAACATGGGGCTGCCTATTTCATATAGTCATGTTTTCCTTAACATCAACCCATCTTTCAGAATAGTGCCTTAGACATGCACAGGCCTGCTCCTGTGACTAGTATGCACTCAATAATAACAAAGAGAGAAATGCCACAAAGCTCCAAGTTTGAGCTAGTTTTCTCTGTCACAGAGAAGTTTGTAATCAAGGTCCTATGGTTTCTCACCTTTGGTAGGCAGGCTATACCAGCAAGCACAGCTGAAATCCATCATGACAGTGGGTTCCACCCATAATTAAAAATACCTCCAAATGGCTCAGTCCTTTGGTAGAGTTAGTATTGTAGAGATCGCGACAACATTAGCCTTGAGCAGGTAGAGCCTGTGCTTCAGGTGGAATATCTCTAGGGGAACAAAGGATACTTTACCTCAATTGTTTGTCTTGCAAGAATAGCCTTTTTGCTTATGTCTTTCAACAACGTAAAGGGACCATTAGGCATTTGAATATGACTCGGGGGAAAGACTGTACTGCAGTCAGACATTGGGCTTAGGGATGTAGGCTCAGCTGCTAGAAGGCTTTTGTAATGTCCACAAAGCTTGGGTTCAAATCCCTAAAAGTATATAAAACAGGTATGATGGGCACACCTGTAATCCCAGAACTTTGGTCATGGATCAGAAACTGAAGGTCATCTTGGCTACACAGAAAATTCGAGATCCTCTCAAAATATATGAGAACCTCCCCACCCACCCCCAAAGGTAATTTTTACCTCTGTGTTGTTTTATTCCAAGGCACATTGTTATAGCCAAGGGACTGGGTAGTTCCCACTGCTATCACCAGAGAAAGTCTAACCACATAACAGAAAAAGACTTTCCGGCATATACTGCCCTACCATGCAAAAGTTGTCACATAGAAAGCCCTGCAGGTGATAAGTGAATTCAGGTGACCCACCATAATCCAGGACTGTCCTTATTAAGATGTGTGATGTTATCCTTCTGGTAAACCCGGATGATTTCATCTCACTATCAATGTGGAAAAACCAATGATAGCAGGCAAGATTTACCCCCAAGGACCAACTTCAGCAACTCCCAGGGCAACCAAAACAGGGAAGCTATATATTGTAGTCACAACAGCCAAATAAATACTGTTTGTTCTTTGGTCTTCAAATTTTGAGTGTTCTCTTGTTAAGCAGGTTTTAATTGAAGTCTTTTTTATAACCAGTAACAACTTACTGAGGATAAATATTCACAAGATTTGGGGGTTTCTTTCTCCCTTAACAG
Seq C2 exon
AGCAATGCTGATGACAGCCTGCGACCTCTCTGCGATTACTAAACCCTGGCCTATTCAACAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053965-Pde5a:NM_153422:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.9=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: