RnoINT0108880 @ rn6
Intron Retention
Gene
ENSRNOG00000014443 | Pde5a
Description
phosphodiesterase 5A [Source:RGD Symbol;Acc:620995]
Coordinates
chr2:227019177-227021305:+
Coord C1 exon
chr2:227019177-227019254
Coord A exon
chr2:227019255-227021241
Coord C2 exon
chr2:227021242-227021305
Length
1987 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TTCTCTTTCTCCCTTAACAGGGC
3' ss Score
12.51
Exon sequences
Seq C1 exon
GAGACGAGGAGAATTTTTTGAACTTATAAGAAAAAATGAATTCAGTTTTGAAGATCCTCTTCAAAAGGAGTTGTTTCT
Seq A exon
GTAAGTTGGCTTTACTGTCCACACTAGCTTTGCTGCCTGGTTAGTTTCCTCTGAGCAGTCATTAATGAGGATCGTTTGTTATGTGTAATGACTTTCGAGGTTGCTGACTGCTCCCAAGTGGAGTATGAAGAGCTGAATGCGGTCACTGGAGAGGAAGGAGACGGACAGTTGCCTTGTTGAAGGGTGACTGATGGGTACAGTGGGGAAGTGGAGCATTCGTGGCTCAAGGATTAGTGTTTGGCTTCATTTCTCCCATCCTTTGGAACGGAAACGGAAAAATTAACATCCTATAGATTGTGAGAACAAGACGATGGCTGTAAAGGTCACTTCTCGTGGGCCACAGCACAGCAGTGCTTTCCAGTGGAGCCGTCAAGAGGACTTGTGTTTCTAGCTCAGTACAGCAGTTCCTTCCGTCTTCTAGCTGTGGATGAGCGCTCTCCTGCTACTTGCCTCTGTCTTTGCCGTGGCAATAACTTGTATCAGCAAAACAGAACCAGGAAGGCACCATAGTCCCTGCACTCGGAAAGATGAAGGAAAATGATTATTACAAGTTCAGTGCCACCCAGAGATATAAATGTTGAGGCCCTGCCTTAAACAATAAAACAAAACGACAGTCAATAACTAACGGTCCTGCAGAATTACAGATAGTGTTGAGACAATGACGATGTCGACATTTTTAAAAAACGAATTGCTTAGTCACAAAACAAATACGTAAATTAAAAAGAAACGACATATAAACACCTGGCTGACTCGTCTATACAATCATGCTTTCCTTAACAGCAACTTCTCTTTCAGAATAGCACCTTAGACAGGCGCGGGCCTGCTCCTGTGACTAGCCTGCACTCTGTAATAACAAAGAGAGAAATGCCACAAAGCTCCAAGTTTGAGCCAGTTTTCTCTTTCACAGAGAAGTTTGTAATCAAGGTCCAATGGTCCATCACCTTTGGCAGGCCTAGTTATACTGGCAAGCATGGTTGAAATCCGTTGGGACAGTGGGTTCCAACTGTGATTAAAATACCTCCAATGTGCTCATTCCTCTGGGAGAGTTAGTATTGGAGAGAACATGACAACGACAACATTAGCCTTGAGTGGGTAGAGAACCGTGCTTAGGTGGAGAATCTCCAGAGGAACCGATGATACTTTACCTCAATTGTCTGCTTTGCATGAATAGCATTTTTGCCTATTTCTTCAAACGATGTAAAGGGACTGTTAGACATTTGAATAGGACTCAGAGAAAGACTGTGCTGAAGTCAGACACTGGGCTTAGGGGTGTCCCTCAGCTGCTAGAAGGCTTTTGTAGTGGTCACAAAGCTTGGGTTCAATTCCTAGCAGTGCATAAAACAGATACAGTGAGCACAGCTGTAATCCCAGAACTTTGGTGATGGATCAGAAGCTGAAGTTCATCTTGGCTACATAGAATAGCCTCAAAATATATGAGACCCTCCCCGCGCCCCAAAAGGTAGTTTTTATAGCTGTGTTGTTTTATTCCAAGGCACATTGTTTGAGCCTGGGGACTGGGTAGTTCCCACAGGCATAATCAGAGAAAGGCTAACAGCATAACAGAAAAGGACTCTCTAGCATATACTGCTCTACCATGCAAAAGTTATCACATAGAAAGCCCTGCAGATGCTGAGTGAATTCAGGTGACCCACTATAAACCAGGACTGTCCTCATTAATATGAGCAATGTTATCTTTCTGATTAATCTGTATGATTTCATCTTACTATCAATGTGGAAAAACCAATGATAGCAGGTTCGCTTTTATCCCAAGGACAAACTTTAGCAACTCCCAGGGCAAGCAAAACAGGGAGGTGGTACCACAGTCCCAACAGCCAGTTTCCCACATAAATACTGTTCGTTCTTCAGTCTTCGAATTTTGGGTGTTCTCTTGTTAAGCAGGTTTTAATGTAACTTTTTTTTTATCGGTAACAACTTATTGAGGATAAATATTCACAAGATTTGGGGGTTTCTCTTTCTCCCTTAACAG
Seq C2 exon
GGCAATGCTGATGACTGCCTGTGATCTCTCCGCCATTACTAAGCCCTGGCCTATTCAACAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014443:ENSRNOT00000019638:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.9=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]