GgaINT0076238 @ galGal3
Intron Retention
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58344081-58349089:-
Coord C1 exon
chr4:58348945-58349089
Coord A exon
chr4:58344184-58348944
Coord C2 exon
chr4:58344081-58344183
Length
4761 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
GCATCCTACCAACCTACCAGCCT
3' ss Score
1.62
Exon sequences
Seq C1 exon
GTGATGATACAATGACAGGAGATGGAGGAGAGTACCTTAGGCCAGAAGACCTCAAAGAACTAGGAGATGACTCTTTACCAAGCAGCCAGTTCTTAGATGGTATGAACTACCTGAGGTACAGCTTGGAAGGAGGGCGATCTGACAG
Seq A exon
GTATTTGCCTGGACACATATCCTTTCTCTTGTTATGAGTGTTTGCAATCCATTTCTCAGTTTCTTTAACTCAAGGGAGACATGGGATGATGCACTTAACATGTCTTTACTAAGTATGTCAAGGTATGAATTACCACTTTATAGGAGGAAGACTTGATCAGGAGGAATATTTCCTAACCAGTCAAGAAATTAATACACCTGGCACTAATACTGTAGTCAGAATCTAGTGAATAATTTGTTTCTGATTCTTATTTGGTTCTTGAAAAAGTGTGGCTTGCTTTATTGTCTTTGTGGTCAGGCAAAGGAAGAAGTCTTGTCTTAGGACTCATAAATCATCTTGATCTTCTCTTTACATGAGTCAGGGATTGTGTGGGTAGGTGAACATTGTGTGTTAGTGTTAGGTGAGCTGACTTTCTTTTGAGCGGTTTGTGGGGAACTGACAAGGTTCACTAAAAATTTATTTAAAAAAAATGAGATCTTGGCAACAGAAATAATTTGTAGCCTACATCATTTTCCAGCCTTGACTGTTACGCTGGCAACATTTCCGAAGCTCAGTGAAATCAGTAGGATCCATTCTGTTTACTTCAGTAGGCTGTGAATTGCTGCTGGAACAAAAGATGTCAGGAAACAGTTCAGTTTGCCTCACAGCGTGTGTACACCCCTCATCAGTGAGGTCTTTTAAACTTGCAGCCTTTGTTGGTTTTTAGACAGCTTCAGTGAATCCACTGAAAACAAAGTGACTGTATTGCTTTTTAAGTCTCAGATGATGTTTATGAACTGCATCAGAATGCTTAACAATCAAAACCTTTTATGATGCTTTTTCAATGGTAAAATTGTTTTTGTGGGATTTTCATTTTTGTTGTTTTTGTTTTTTAAGAGGTTGTATAAAGTGATTGTGCAGCCAAGTGTTAAGCCAGTTTCTGCTCCCATTTAGAACAGTTTGACTTTCAAACAACTGTCAATGGATTTCAGTAGATTTTCACAGGCATGTAATTGATGTGTCCTATTGAGAATTAAATGAAAATGATTTCACACTGTTTATCATGCATAGTTACATTGAAATGAAGCAAAATGATAAAGTATGAAAAGAAGTACATCTTTCTGACTCCATGGTGTCATTCTGTGTCCCTATCTGGTTACTGGTTGTAAGAATTTTCAGACACTACTTAAATTATTTTGTTGTTGTTGTTTTTCTTATAATTTTCATTGCATTACACTGACTTTGGTTTTTAAAGAAAGTCAGCAAAGCAAAATAGTACTTCTTCTACTCATATAATCTTATGCATTAACAATTTGATTTAAAAACATATTATTTTCTTTTGTAACCATCTTCCCTATTTATTTTATTTCTCTCTCCCCTTCATTCTTTTTCATATGCTTACATAGCACCATGCCCAGGTAGGTATTACATAGCATGAAAATATGTCTCTCTATCCTTTCATGGCACTTGTCTCTCTTCGTTCATTTTGAAGGCCTGCTATGTGCTGGGATGCTAATCTTGAGAACCAAATGAATGATGTTGCTGTTGCAGATGGTTGTGTTCTCAAATGACTATGATATGCATAGGTGAATACAGATACAACAGTACTGTCAATAGGACAGTAGAAAGTCATGGTATGACATACCTACTGTAACACAGAACTCCCCTCAAGTAAGAATCAGGGAAGCTGCACAAGATCGCAACAGTTGGAAATTTTCCTCTCGTCATGCTGCTGGGAAAGTTAGCTGTTTTCATTTTCTATGTGGAGAAACAGTGGTAGAATAAAAAAACATAAATGGAATGGGCTACACAAGTTGGATTCCCTCTTTGGATATGGAGGGCAAGAACCATTTCAGGCCATATGAGATCACCAGTATTTGAATATACTCCTTTTCAGTGTAGGTGCCTTCTGACTTTTGTCCATGATACCTATGAGGAAACTTTTCAGTCTCTAATAGTGAGGTATTTTCAAGGCTGACTCATACAGTTTTCAGTGATATCAAGTTATAGATACCAGGTTTCAGAAATACTGTACACTTCCCACAGTGATAGATACACTTAGCTGGACTAGAGGTTACTAGGTCTGTCTAGATGGACAAGTGGATGGGCAAGTACTGCAATATGGTCTTCTAATTATCCAGATTAGAAAGTTGGCTAGAGTATACTGCTTTCCTTTTCTGGATACCATCTGGAGTTCATTCAAGGCTTAGGAGAGGTGAATGATACATGCTTGCACATACCTAAACACAAGCATACTTTAAGAGCTTTGCAGGGTTGTTGCGTTTCACAGTTCACTTGCTGTGGCTGAGGAGAGTGCTACTGACTTCTCAAAAAGGGACAGAGATGTACCAGCCAAATTTGGAAAGAATCTGCACTTAGACATTAGTGTTGATTAGGAATCCTCTTACAGGATTCCTGAAGAGCTACTACAGTAGTAAACAATTGTTTCTGTCCGATGACACTACACTTCCTTAACTGGACTGACATTTCAGACAGTGTCTTTGTTTGTAGATCTCAGAATCACAGACTTCAAACAAACTACTGTTTATTCTTCGTTTAGCTGATGCAGTGCAGAGAAGAGAAGCAGTGTTGTCTGAACACTGCTTTTGAAATAAACAGTAGAAAATTAAAAATTAATTTATTGCAGACCTCAGTCATGTTTGTGTGTACCTTGTCTTTTGATGAAGTCCATACCCTCAGAAGTATTGGGTATTTACTGGAGGTAACATAGATGCACTACGTACTGGAAATGTACTAGGTTGCTTGTAGTGGTAGTAGTTGTAATGTTAGGTACTTGTAGGAGAATGTGGACAAAAATAACCTTACAGATGATCGGTCAAATCTAGTACATGTTTCCTTTCATTAATGTTACATGTTATATTAGCTGAATGGCAGAACCTACAGTTTGGATGGAACTTCTTTCCAGCATTGCATGGCACAGCAAAGCAGTTTTGAAAGTGTCAAGTAGTAAAGTGGAAAAGACTTATGTTGGCAAATGGGGTCTGCTACTGGAGCTTATTTTCCACCCAAAGAACAAATGTTCATTGAAGTACTGTTATTATGAGTAAGCAGCACGTACTCTGCCTACCTAGTTCACACTAAAATGTTTAACCAAAATATTCTTCTGTCAGGAGTCCCTTTCACGGTGTTTTTTTCTGGAATGATTTTCTGGATGCAGACAGGGTGAACTACTTGAAATCAAGATAATTTTTATTTTAATGAAATCAGAATTATATTCCAGAAATGCACAATCCCAGAAATATTCCTAATATCAGCCTTACCCGTCTTACCTCTTTTACTTGTCTGGGGGAAATGCAGTGCACGACATGTTAAAGAGATTACTTTATGGTGAGCAGTTTGTTTTTCTCAAGACTTTTCTAAGGTTGATCCTTGTGTAATGCTTATCTCTGTTTTCACTACTGTACAGTCCATTATGCTAAGTAGGCCACTGGTATCTGCCAGTCATAATAGCATTGATCATTCTACAGTGTTACGTATTTGTAATAAAAATAAGATTATCATTTTCTTTTAGAAAGGGATTTAAAAAGCTGGGGGAGTGAAGTTAGCTATTAATCCAAAAGGCTGATTGGTGTGAACCAGATGGTAAAACCTGATTTCTGACATGATCTGCATTTAAGTACTTGAATGTCATGTCCACAGTGTAATTGTGACATTTTTATTGCTGACAGATGAAAAATAATTATCCCTAAAAAAATCTACATGTGTGAATGAATGCCTGCTGTTCTGATCCAGTGCTTTAGTCATTATGAGTAGTACTCATGGGTGTATAAGCCATGAAAAAAAAAGCTACTTCCTTTGGTTACATGTGCTGTATTCATCAGAGTACAGAAGAATATCACAAAGTGCACGTACATCATCTAAAGGTGGCGGATCCACTTCTAAAAGTCACTTTTAGATGCTCCTGCTAGTGAATGCATATAGAGCACCAAGCTAGTGCTATTAGATAGCAGAAACCCCATTTACCTCAATATTTCCTTCTGTGGTGTCTTATTTGTCTCTTTGGCTTTCTGCTTGTGAATACTGCAGTTAAATCTTGAGCCAGTGCTTGGAAGCAGCTTATTTACTGCCTTGCATCCCTCATTGCTACAGCAACCAGTTTTCTGTGGAGCTGTATGTACTTAATGAGAAAACAGTGCTGACATTCAGAGTGCCTCTCTAAAGATGCTGTTGGCATACAGAGGAAGAATTTCGTCTTACACAGGAGCTTGCGACTGGCCACAATTCACCTTGCTGTGTGTACCTTCCAGGGGACAATATCAAGCTTTACTCATTTAAAGTTTTAATGGGATTAGAGTAGATCATAACTAAGCTCTAGAAAGTATCATTTCAGATTTCCTTCGAATTTAGCGTTCTGTTTTTCTTGTATTATGTAGTAGGAGAGAGAACTCTTCCAAAGATCCTTACTTAAAAGGTATTTGTGTTTCTTATAATTAAGGAAATAATCATGCCACAAAGCCAAGTATAAAGCATTTGTGAATATAAAGTAAACTGTTAAAATAAATCACCTAGATTAATCTCTAGGTTCTGCATTTGAGATGACTAAAAGTCAGTCAAAATGCTTTGTGGTCTTTGGTCAGAAAAGTAGCTTAACAGATTTGTAAAGATTTTTGCCCCTCATGACTATTATATACTCCCCCTGGAAGCTGCATCATATTGCTAATTGCACGCTTTTTTTCATTCTCCCACTTGATCTATCATCACACCTTTGCAACATCATCTGTACTGCTCATCTATTGCTATGGCATCCTACCAACCTACCAG
Seq C2 exon
CCTGCGATCCTTCAGTTCAGACAGGTCTCACACACTGAGCCATGCCTCCTACCTGAGGGACAGTGCCATGATTGACGACACTGTTGTAATCCCTAGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044:ENSGALT00000019661:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=NA C2=0.187
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]