HsaINT0008096 @ hg38
Intron Retention
Gene
ENSG00000145362 | ANK2
Description
ankyrin 2 [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr4:113311255-113317809:+
Coord C1 exon
chr4:113311255-113311399
Coord A exon
chr4:113311400-113317706
Coord C2 exon
chr4:113317707-113317809
Length
6307 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
GCCTCCTGCCAACCTACCAGCCT
3' ss Score
2.66
Exon sequences
Seq C1 exon
GTGATGACACAATGACTGGTGATGGGGGAGAATACCTTAGGCCTGAGGACCTAAAAGAACTGGGTGATGACTCACTACCCAGCAGTCAGTTCCTGGATGGTATGAATTACCTGCGATACAGCTTGGAGGGAGGACGATCTGACAG
Seq A exon
GTATCTCATAAAACTTATAATTGATGTCAGCCAGAAGTATGTGCAACATATTTTTTATGATGATGATAAAAATGTAGATGCAATTATTGAGCATTTAATAGGTACCTTATTAATCTCAGCAGTTAGCATGTTATGTTTTTCCATTGTCTAACAACTTTAAGATATGCCCATTTTAAAGAACAGAAAACTGAGGCCTAGAAAGATCAAATAACTTGGTAAAATCAAACAACTAGTAAGAAGCAAAACCATCATAAATAAGAGTTCTCATCATTTAAATGTGGCGTTTTTCATCACTGGCCACTTTTTCCTCAAATTAAAAGGACAATTTTGCCTTATAGACATTCTTACTGAGCGGCATCACAGACACTTTGGATACTCTTCTGCCCCCACTTTTTTGTTAGTAACATAATTTCTGTGAATAAAGTATGTTGTGAGGCTGAATTAAAAAGAAATACATTCAGAACAAAACTGCCTGGAACTGACTTTTTCATGAAAAAGAATCCGAACAGAATCCCACGAGAGCCTGGATACAAGAAACAATCGGAGCAAAATCTGAGGGAGCCCAGTGTTAATAGGCAAATCTGGGAGGTTTATATAATATTCTGAGATATATGATCAGTGCTACTTTTTGTTATTATTAACTAGTACAACTGGCACTTGTTATTTTTTTATGCAAGTTAGGTAATGACATTCTGTGGTTCCTCATTGAAATTATGACTGATAAGTTGGGCCATGAATATGGATGTCATAGCTGGGTGCAGTGGCTGGGTGCTGAGACCTGTAGTCTCAGCTACTTGGGAGGCTGAGTTGGAGGATCCCTTGAGCCCCAGAATTCAAGTCCAGGCTGGGCAACATAGCAAGACACTGTCTCTTGAGACAGAAAAAAAAAAAAAGAAAAGAAAAGAAAGTTTGTCCACGTAGTGTAATGTGTTCTGCTAATCAATAATCTCAGGTTTATAGTTTTAAAGTTGGCACTATTGTAAGCTATTTTATGAATATCCAGCATAGAGTCTAAGAAATAAATACCTTAAAGTCTAAGTGAATAATTAGCAAAAACAAACTTTTCTTGGGCTTTTTCCTTGAGCACCAATGCCCCCTTCCACTATCTTTTTTTTTTTCTTTAGCAAGATAGGCTTGTTAACTTCATAGTCTAATGGGATGGGAGAGGGCATAAGCTAGTGGTACACATAGAGTGCCACTGAAGCCCTGAGGCTCTAGCTTCCTGGAGCAGATGAAACCAAACTGAGACCAAATAATGAGTAACAATGGTGAGGAAAAGTGGGGAGGGCATTTGAAGCCTTAACAAGGTCTTGAGCAAAGGCTCGCAGGGTGTATGAGAAAAAAGGGAATGCAGTGTTGCTGGAGTGTAAGTGTGGAGGACGGGAATTATATTTGCATAGCAGGGGGATCCTTCTGCCAGTGAGAAAGAGGATGAATTTTAAAGGAGAGTTTCAAAGGGCTAAACCTGGAGATTGCAGCCACTCTGAGAAGCAATTGTTCGTGTATTAACTGCAGGTGTCATGAGAGGACTAGCACTCTAACCTTGGTGATAGTCATGGAGAGAATTTCAGAAATAAAAAATTTGAGAGTTTTTTGAGACATGTGTAGGAGGCAAAACTAGTCAGATTTCATGATGAATTTCATGATTTAGGTGAGGAAGGGGAAGGAGATTAAATTGAGTCCTTGGCTTCAATAACTTAGATAAAGGGTGCTCCCAGAAGGAGGAGCCCCTCTGGAGTTCCATAAGCTGTCTTGATACATTGGTAGATTTGGACCTTATACTCTGAGATTCTTAAAAGATTTCAAATTTGAATAAAGTGTAATGTTCATGGCATTGCACAAATTGATGATAATCTATGAACAGTCTTATTACTGTCAACCATAAAGCTTCTATTTTTTGCATGGTCTCCCTTATTAAGAATAAGTACTTGATTTGATCTGTTTTTCTTCTTTCAAAGTACTTAGGTTGAGGAAGAATTTAGAATAATACTTTCTATAAAACAGGATGGATGGCTTGAATGCTCCTGCTTAAATCCAATACTTTTCAGCACATAAGGTCAGGGGACATGAAACAAACAAGACATACTGTGTTCTCCAGGTCTCCACTTGCATTTCTAGATCACTAGATGTATTCACCATTTCCAAAATAGAGTGACAGACAGCATCTCATTTTCATGGTCTTCTTTTATTTTTAATTTTGCTTAGGCAATTCAATATAAGTTACCTTTTCTCAGTGACCATTTTTTCCTTTGCATTATTTCTTTATCTGAATTGCTTTCACTAGCACCATGCCCAGGTAGGTATTAACAGAGCATGGAAACAAGCCCTTCCTAGATTTATCCACATTTCCCTGCTCACTGCTAAACCTGCGTGTGTGTGTTGCCGGGGCGGGGGGTGAGGGGGAGCGGTGGGGGAGTGGGAGGGGGTGCTTATATTCTAGAATTATGGATTTATTCTAAAATAAATATTTTTATGTATTGAACTGAATAACTAGCTGAGCTAGAAGAGGTGAATATATTATTAAAATGTAAATCTGTGACATGACCCAGGTATTGCTTTGTTTCAACAATCACTGCTGCACCTGTGGTTGATAACACATTAGCATGGCTTTCCCCAAACAACCCCAATTAGCCTATGTGTAGTTGGAGAAGATAGAAAAAATATTCTGATGCCTAAAATATGCATAGATATGGAAGAATACAAATACATACAATTTAATGTACATTAAATACAAATACAACCAAGTTATGATTAGTTGGATTTTGCATCTGTTTTATTTTATTGTAGCTTACAAATTAAAAATGCTTTCCAAATTCAATGTAAAATACTAAATAATAATGAACCACAGAAGCTTCTTCATATCTTAAAGCAAATTTATTGAAAATTGTGGATTTCTACTCGTTAAGTTTGCCACTCCATTAATTGAATGTTTAATAAATATTACAGTTTACCAAGATAGTAATTATTATACTTTTCAATAAAATTACACTTTCATACCACCTATTATGTGTCCATAAAGCAGTTGTACCGTAGTAAAATAAAAAATATAAACTAAGACCATAACAAAACCCCTAGTACATCCCCTAGATGAACAGCAAGTAAAACTTTACACTTCTATGGCTATGTTATTATACATTTATTAACTGAATAGCAGAACCATTGACTTCATGAAAAATTGGCAACTGTATTGGAAAATATTTAAACTTGTTTTTAATGTCTTAAATCAGAGTGAACAATTTCTGATCCAAGGGCTTAAATTATTCCAGACCTTTGTCATGCTGGTTATATTATTTTAGTGAGAATAATTCTTTAGTTATTATTATTTTAGAGGGAATATTCTTTTAGAGCGAATAACTTCTCTGGTGTTGGAATAGTCCATCTTTATTTCATTTAAGTAGATTATACGACATCATTTTTAAAAAAGCAGTTAGAAATGATACACATTGATTAAACAACCAATTAGTATTTCAGAAGGCAGTAAGTAAGTAGAGGAGGCTAGAATACAACCCATAGAAAGGTAGAGACACTCCTATATATGGTTTTGACTTATTCATTGTTGCTCCCTCTCTCTGTCCAACTTTTCTCACTCTCTGTGTACATATCCTAATATCTTTCTCTCTCTACTCTAATCAATTTTTTGTGATTATATATCACTTTGTCTCCTTCTTTCTTTTCTTATCCCTCTGTATTTCTTTCCTGTTGGGGTTTTAGGAAAGACAAAAAACACCAACACCTCTCTATTCCTCTCAGTACAAAACCAATTGAGAGATAGACTCAGGTATCAACTAAATGGATATCAAAATTTCACTTGTATGACTGATATACCGATTGCAAAGTGCGACTTTACTTTCATAGCCCAATGGGCTCTTTAATACCACATTCCTGAAATAGACAGACTTGTCTACTTAGCCATAGTCACTCCTTGAGAGTGGCAATTGAGACCTGATTGATTCTTTCAAAGTTTAGACCTTTGCAATCTGGCAGCCACGTCACAAGGTTTTATTTGAGGTACCATTATTTACCATTCAGTTTGTTCTCATTCAAGCTAAATTTTCATTTTCCCTTTGAGACCGGTGTTTCTGCTATTCCAGAAGACGGTTGAGCCCATAGAACAGCTGTATTAGAAACAGAAGAGGTTGGCTCCTCTACTATTTTCCCTTCCTTAGCCAAATTCAAAACAAAATAAAGGTGAATAGAATTTAAGAGTTGCTGATCTAGCCCGGGCATAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCAGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGAACCTGGGAGGCGGAGCTTGCACTGAGCCACGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAATTGCTGATCTCGTGCCACCTGGTACAAAACACATCCAAGTGGATCTTAGCTATCTTTGTGATTTACAGCAGGAAAACAAATTATCCATTCCACCAGCTGAGACAAGCTTTTGCTGAGATTAACCCTTTTCCCAATAATCTAATCCCCTATCAAAAGCTAAATGTAAAACCATCTGTAATATAAGTAGCCTCCAATTGCTGGAGCTAAAACTCTTGTTGATGAAATTACTAAGGCTCTGTCAAGAGCCTCAATCTTCTCCAAGAGCCTACATAACATAAAATAGTTAATTCTCAGGTTATATTTAGATTTTGTTTTATTGTAAACACAGATTTATGTATGTGTTAACGCAAGGATCAGACAATCAACTCTTTTTATTCATGTCATTTACCCTTTAAGACTTTTTTTGGAATATACCTACATGTAAAATAAGAAGGAGAAGGTCCTGGATTACTATGAATTACCTACAAAGTGATGATTTCCTCAAAGACAATTGATGCGGGCTATGTTGACACCTCATAGATATGATAGTACATGGCTTACAAAATTAAATATACTTGCAAAATGAAGATAGTTTCTACTAATAAATATGCTAATTTAACATTTAGTCCATAATTCTACAGTGCTTCACTGGCCAAACACCTACTAGCTAAAAGTAAATGAAAGTTTGCTTCTATAAATATTGTGAAAGCTTGCGTATCTCCTTTTTTTCCCTTATGGGCTTTGGGCTAATATTTTGAACACAGATCTTTAATACTTGAGCTACAGTGTATAAAATATAGCTTATTTAAGATACCAATCTGTCATTTGATTTTACAAATTGATTTAAAAGGAATGAGATTGCATCTATGCAAATGTCAAGTTTTACCTATTACATATGAGTGTGTAATTTAGAACTTTGAAGTTCAGATTTTTCAAAAATGTAATGCATGGTTTATCAAGGCCTAAATCCCATTTTGAAGCCAAACCTCATTTTTGGTCAGTGGCCATTGGCAATTTGTCTTTGTGCTGGCAGGTGTGTCTGTGTTCTGGGCTGGAGCTTAGATACAGTTTCTTGTGCTCATGCATCTCATCACCACGGCAACCAACACTCTGGTGCTTCAGTCACCACACACAGGACATGCAAAGGGGACAGTGCTCTCGTTTGAAATAATAGCATTGTTGGAGTCACTAGAGACAAACAAGAGGAACTCCACTTCCGCAGGAAGCATGCATCTGGCCACAGTTCATTTCACTCTGTACCTTCCAGGGGAATGCACCAACATTCAGTCATTCACAGTTTAGAGAGGAGGAGAAAGAGGCATAGAGAGAGAATGGAAAATAATAAGCGAAAATGAAACTGGGCTTTCATTTTGTTCTTCTCTCTGAGGGCCATCTACTTTCCTCCTTATATTTTTCTTAGTTGCAGAGAGATTAACATTTAACACAGATTTAAGCAATCTATCCTGGAATTATTTCCTGAGTGAATTTCTGGTACTGGCAGTAATAAACTACAGTTGCTGGTTTCAAACATTTCTGGGAAGAAAATGAATCAGATTAGGAGTATCAAATTTTAACTTCTGGATTCCCTTGTGCTCTTGCCATTGAGCGGTAGGAACCTGTCAAAGGATGTGTTAGTTCAGCTGTTGGACAAAAAGGTAGGACAACAGAGACTTGTGTCCCCCTGGAAGTTGTGCTGTTAGCTAATAGCACGCTTTTTTCACTCTCCTGCTCGGCTCATCATTTTGTCATCCCAACCCTGCTACTGCTGTTGGTATATGCCATGGCCTCCTGCCAACCTACCAG
Seq C2 exon
CCTTCGATCCTTCAGTTCCGACAGGTCTCACACTCTGAGCCATGCCTCCTACCTGAGGGACAGTGCCGTGATGGATGACTCAGTTGTGATTCCCAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145362:ENST00000357077:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=NA C2=0.186
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development