MmuINT0015118 @ mm9
Intron Retention
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126679763-126684862:-
Coord C1 exon
chr3:126684718-126684862
Coord A exon
chr3:126679866-126684717
Coord C2 exon
chr3:126679763-126679865
Length
4852 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
ATGACCTGCCAACCTACCAGCCT
3' ss Score
2.27
Exon sequences
Seq C1 exon
GTGATGACACTGTGACAGGTGATGGGGGAGAATACCTCAGGCCAGAAGATCTCAAGGAGCTCGGAGATGACTCACTGCCCAGCAGTCAGTTCCTGGATGGCATGAACTACCTTCGGTACAGTCTGGAGGGAGGAAGATCCGACAG
Seq A exon
GTATTCGCCAAACTTACATTCAGTTTCACAAGTATGCAGAACACATCTTTTAGACATTTTCTTTTTTCCCTTTTTCTTTTTTCTTTTGGTTTTTAGAGATAAGATCTCACTATGTAGCCCAGAATAGCATGGAACTTTCTCAGATGAGCCTCAAACTTCTGATCCCCCTGTCTCAGCCGCCTGAGTACCGGGCGTGCACTGTAGGCACATATCACAGTGCCTGGCTTACCACATATTTTTTATGGTGATAGAGAATATAGACACCATTGAGCACCTTGATCAACAGTTCACTTGCTTCTTAGTGTGCCCTCTTGTTCATGTCTCTGACACCTTAAGTAGAGCCCATTTTGAGGACCAGGAAACTAGTTCAGAGATATCAAAGAATACTGCATAATCATGCGGCTACCACAAAGCAAGAGTGAGCCAAGATTAGAAAGGATTCCCTGCCTTTCAAAGTCATGTATTTAATCAGCTGCCACTTTTCTCTGCAGGCAAATTCTAAGGGCAGTTGTGGTTAGCATCTCCAGATACCTCTGACTCTAAGTTAATTCTTGGCGCTGTAATTTCTGTGTGCACACAAATCTGTTATGAAGAATAACAGAAGACAAGCGCAAAGGAAAATTGCCCTGGAGTCAACTTTTCCATTAAAAAAAATTTAAATAAATAAAAAAGGAGGAGGGTGGGACTTTAAGTGGTGACCCGAGTCCATAAGGATCCCACTTTGTGGACAAATCCGAGGAGCCTTGCTAATATTCTGAACTGGGTCAATGTTATCTCGGTTACTTCAAACTAATACGCCTGGCGCTTGCTCCTCTCCGTAGCAAGAGGACTAAGAATATTCCGAGTGCTTCTTCAGAAGTATGGCTGCCAAGCTGGGTCACACGTGCGCTTGTCCATGTGACCGTATTGTCTTCCCATCCACAGTCCCGTGACCATCGTGCAAAGCTGACTCTTGTCAGCCATTTTAGAGGTTTCTCACTTATTTATCTCTGTAGACAACTTATTTGGGGCTTTCCCCTTGAGAGCCTGGATCCCATTTCTTGTTGTTGTTGTTTGTTTGTTTTTCCTCTTCTTTTGTCCCCTTTTCTCACATTTTTTTCCTCTGTGTAAGTTCATTCTTGAATTGGTCATCCTGGTAAGTCCAGGAGGTACCGACGTGATTAAAATATGTTCTCGAAATTCATAGCCTAACAGAGACTTTGAAAGGCCGGGGCAGAAGGGTTCTGAGCATCTCTGTAGGACAAAGAGACACAAGCTTTCTGACAGGCAGTGGACCAAACCAGGTGGAATGCTGAGCACTGCTTCTGGGAAAGGCAGAAGGCACTGAAGCCTTCATAGCGGGGTTCGCAGAGGCTTGTGTTAGCGGGACCACAGGGTGGTGCAGTGGGCTGGATCGGGAATGGAGGGGATGCACACCCGCATCTTACCAGAATCCCTCGTCTGTGACACAGGCAATCATTCTGGTGGAGAGGGGTCAATGGGCTAGACAATGTAGGTGCGGTATACTGTTTGCTGGTGGTGATGGCAGTATTAAACTCTAACCCTCGTCCAGTTGTAGAAAGAATTCCACAGTGACAATTTTGAGATGTGGGTAGTAGGATTGGTTGGTGAGTTTTATGGGGCAGTTGAAGAAGATGGGGTTGTGACTCCTTGATATTGGTGGCTTTCATAGAGGGTAGCCCTTAGGGTCAAGCTAAGGAAGGGGGAGCCTTTGGGAGGTGTGGAGAAGGGGTGATCGAACCTGTGATCCATACAATAAGTTCTTATCTGGTGACAGATTTGGATTTGTAATCTGAGATTCTTTTTCTACTATAAATAATTTTTATTAATTTATTTATTCACTTTACAGCCTGACCGCAGCCTGCCTCCCTCTAATACAGCTCCCCTCCTCTATATCTCCTCCCCTTCTCCTCTGAGAAGGGGGCTGGGGGGCTGGGTATCACCTGACCCTGGCTCCTCAAGGCACTGCAGTACTAGCTGTATCCTCTCCCACTGAGGCCAGACAAAGCAGCTCAGTTAGGGGAACGGGCTACGTAAAGTAGGCAACAGATTCAGGGACAGCCCCCACTCTATGTTTCAGCATAAGAAAATATTTATAGCTTTGTGTGAATTCACAGTAATCTCTGAATAGCCTGATTAAGCTCAGCCAAAGAACACTTCATTTTCATCAGTTATTTTTTAAAATTATTTTTAAAAAATGCCCGATTCACTCATAGTTTCTATTTTCAATGTAAAGCTGAGAGTTATAACATACTTTGCACAGAGTGGGGAAGAGGTGAATGGTTTGAGACTTATCAGCATACAAAGACAGAGACATGAAACAAACCTTGCACGCTCTGTTCTTGGATTCCCATGTGCACTTCTTGACCACCACATGTATACACAAGCCCCCAAATAGGTCTTCCAGACCACATCTCATCTTCATGTTTTATTAATTATTCTTTCAGTTTTGCTTGAGCAGTTTGGTACATCACTTTTTTTGGTAACCATTCTCCTCTTTCATTATTTCTTTATTTGGTGTGCTGTCCATAGTACCATCCCCAGGTAGGTATTACACGGCATGGAACCTTGGTCTTCCTGGGTTCATTCGCATTTCCCTGCTTCCTGCTCATCACAGCTCACTGCTCACTGTGTGTGTTTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGTGTGCTGGCAAACGCTGCTTATATTCTAGAATTATAGATTTTCCCTCAAATTAGCCCTTCTTCTGCGCTGCCCCCCCCCCCATGCTAAATGAGTAACTGCTGGAGTTAGGAGAACAGTGTCACAAGAACCAGCCCTGATTCCTGATTCTAACTCTTACAGCGCCACCTTGTGGCTGGCAATGCAGGAGCATGGCCCTTCCATAACAAACTTAGCAGCCTATCTATCTATACTGAGAAAAGACAGAAATCAACATTGGGGTGCCTAAAATAAGCATACATACAGAAAGATTAGAACACATACATTTCAATGCAGATGGGGCAAAACCACAGCCAGAGTACAGTCAGTTGGATTTGGATCCATTTATTATTGTTGCTTACAACTGTCCAAATACAAATAGGAAAACTCACATATTTACTTATTCAAAGGGGCTTCAAACTCTACAAATTGAATGTCTAGTAAGTATTATAGTTTCCTAAGCTAGTGATCGTTACACTCATTCAATTCTATAAGGCGGTTGTGTGAAAGTATAAACTGAATCCTTCTTTCTATCTATAGCTGTTGGAGCCTCCAAGTGAACAAGTACATTTTAATTTCTTTGAGCATGTTATTCTCAGTGCATTAACTCAACAGGAGGCCTCCCCGAAATGATGTCTTGTAAATGGAAACTCTGTTGTGACATGTTTAAACTTGTCTGTGATGTCGCCCACCAAATGTACTCAGTTTATGATGTAGAGATTTAAACTTTTTTCAAAAGTTTATTCTCGTTATTATTTCACCAGAGAGAATGATGTCTCTGCTGTTAGAATATTCCAGTCATATTTACTTCATTTAAGAAGATTCTGTGACATCATTAGGGGAGAAAAGAACAGTTAGGACACATGAGCTTGATTCACAACAGGCAGCAGAGACAGCGATGTGAGATCCATAAAGAAGTGAATACTCAAACTGTGGTCTTGTCCAGTTCCCTCCCTCTGTCTCCACACTCTAATATCTACCCTTCTCTTTTGTGGCTGTAGGCTACTTTGTTTCTTTCTTTCTGTTAGTCATTTAGGCAAGACAAAAACTTAATAACTCCCTCTACCTCCTCTATATCAAAACCAGTTGAGGAAGACCCCAGAAGACAGAGGCAGGACAATCAAGTGTTCAAGGCCAGCCTGGGCTACATCGTGAATTCCAGACCAGCCTAGATGTGACAGATTAAGACTCTGTCTCAGGAAAACAAAACTAATTATACCAACATAATGTCATTTGACTGTGCAGATTAATTAGAAGGACTAAGTTATGCAAAGGACAATTGTTCTGTACATTGCATTTGAGTCAATAATTTGGAATAACAAAGATCAGATTTATCAAAAATTCAAAACACTGAATTGCAAGGCCTTAATTGTATTCTGAAGCCCCACATCACTTTTGGTCAGCATCCGTTGGCGAATTGCCCTTGAGTTGGTGTGTGTCTGTCCTGCTCTTGCCTCTCATCCCCATGGCAACTCTTTAGGGATTCCTACAGGACACACAGGGCATGCAAAGGGGACAGTGTTCTCCTCTGAGATCACGGCACTGCTGCACTCACCCGAGGTAAACAGGAGGCGCCCCACTTCCACAGGAAGCACGCATTTGGCCACAGTTCATTTCACTCTGTACCTTCCAGGGGAGGACACTGACATTCAGCTATTCACAATGTGGAAAGGAAGGGAAAGTGGCAGGAGAAGAGAAGAGAAAATAAAGAGGGGAAAAAAGAAAAAAAAAACACACAACCCTGCCTTTTCATTTTGCTTTTGCTCTCTGAGTAGTCTACTTCCCACCAAATATTTTCCCATGGCTGCAGGGAGATTATTTAACACAGATTTAAGAACTATTGCCTGCATAAAAAATTTCCCCCCACTGGCAAATAAGTGACAGTTGCCGGTTTCAAACATTTCTGGAAAGAAAGCGAATCTGATTAGGAGTATCGAATGTAACTTGCGGATTCCCTTGTGCCCTTGCCGTTCAGCGTTAAGCACGGTCTGGGGATGCGTTTTGGCTGCTGGGCAGAGACCTGGGTAGGGCCACTCTGAGACCCGTGTCCCCTGGAAGTTGCACTGTTAGCTAATAGCAGGCTTTTTTCATTCTCCTGCTCGGCTCATTTCACCTTCCCAACCCTCCACCGCTGTCGGTACATGACCATGACCTGCCAACCTACCAG
Seq C2 exon
CCTCCGGTCCTTCAGTTCCGACAGGTCTCACACTCTGAGCCATGCATCGTACCTGAGGGACAGTGCCATGATTGACGACACGGTTGTGATCCCCAGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-Ank2:NM_178655:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.506 A=NA C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: