MmuINT0015118 @ mm10
Intron Retention
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126976845-126981944:-
Coord C1 exon
chr3:126981800-126981944
Coord A exon
chr3:126976948-126981799
Coord C2 exon
chr3:126976845-126976947
Length
4852 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
ATGACCTGCCAACCTACCAGCCT
3' ss Score
2.27
Exon sequences
Seq C1 exon
GTGATGACACTGTGACAGGTGATGGGGGAGAATACCTCAGGCCAGAAGATCTCAAGGAGCTCGGAGATGACTCACTGCCCAGCAGTCAGTTCCTGGATGGCATGAACTACCTTCGGTACAGTCTGGAGGGAGGAAGATCCGACAG
Seq A exon
GTATTCGCCAAACTTACATTCAGTTTCACAAGTATGCAGAACACATCTTTTAGACATTTTCTTTTTTCCCTTTTTCTTTTTTCTTTTGGTTTTTAGAGATAAGATCTCACTATGTAGCCCAGAATAGCATGGAACTTTCTCAGATGAGCCTCAAACTTCTGATCCCCCTGTCTCAGCCGCCTGAGTACCGGGCGTGCACTGTAGGCACATATCACAGTGCCTGGCTTACCACATATTTTTTATGGTGATAGAGAATATAGACACCATTGAGCACCTTGATCAACAGTTCACTTGCTTCTTAGTGTGCCCTCTTGTTCATGTCTCTGACACCTTAAGTAGAGCCCATTTTGAGGACCAGGAAACTAGTTCAGAGATATCAAAGAATACTGCATAATCATGCGGCTACCACAAAGCAAGAGTGAGCCAAGATTAGAAAGGATTCCCTGCCTTTCAAAGTCATGTATTTAATCAGCTGCCACTTTTCTCTGCAGGCAAATTCTAAGGGCAGTTGTGGTTAGCATCTCCAGATACCTCTGACTCTAAGTTAATTCTTGGCGCTGTAATTTCTGTGTGCACACAAATCTGTTATGAAGAATAACAGAAGACAAGCGCAAAGGAAAATTGCCCTGGAGTCAACTTTTCCATTAAAAAAAATTTAAATAAATAAAAAAGGAGGAGGGTGGGACTTTAAGTGGTGACCCGAGTCCATAAGGATCCCACTTTGTGGACAAATCCGAGGAGCCTTGCTAATATTCTGAACTGGGTCAATGTTATCTCGGTTACTTCAAACTAATACGCCTGGCGCTTGCTCCTCTCCGTAGCAAGAGGACTAAGAATATTCCGAGTGCTTCTTCAGAAGTATGGCTGCCAAGCTGGGTCACACGTGCGCTTGTCCATGTGACCGTATTGTCTTCCCATCCACAGTCCCGTGACCATCGTGCAAAGCTGACTCTTGTCAGCCATTTTAGAGGTTTCTCACTTATTTATCTCTGTAGACAACTTATTTGGGGCTTTCCCCTTGAGAGCCTGGATCCCATTTCTTGTTGTTGTTGTTTGTTTGTTTTTCCTCTTCTTTTGTCCCCTTTTCTCACATTTTTTTCCTCTGTGTAAGTTCATTCTTGAATTGGTCATCCTGGTAAGTCCAGGAGGTACCGACGTGATTAAAATATGTTCTCGAAATTCATAGCCTAACAGAGACTTTGAAAGGCCGGGGCAGAAGGGTTCTGAGCATCTCTGTAGGACAAAGAGACACAAGCTTTCTGACAGGCAGTGGACCAAACCAGGTGGAATGCTGAGCACTGCTTCTGGGAAAGGCAGAAGGCACTGAAGCCTTCATAGCGGGGTTCGCAGAGGCTTGTGTTAGCGGGACCACAGGGTGGTGCAGTGGGCTGGATCGGGAATGGAGGGGATGCACACCCGCATCTTACCAGAATCCCTCGTCTGTGACACAGGCAATCATTCTGGTGGAGAGGGGTCAATGGGCTAGACAATGTAGGTGCGGTATACTGTTTGCTGGTGGTGATGGCAGTATTAAACTCTAACCCTCGTCCAGTTGTAGAAAGAATTCCACAGTGACAATTTTGAGATGTGGGTAGTAGGATTGGTTGGTGAGTTTTATGGGGCAGTTGAAGAAGATGGGGTTGTGACTCCTTGATATTGGTGGCTTTCATAGAGGGTAGCCCTTAGGGTCAAGCTAAGGAAGGGGGAGCCTTTGGGAGGTGTGGAGAAGGGGTGATCGAACCTGTGATCCATACAATAAGTTCTTATCTGGTGACAGATTTGGATTTGTAATCTGAGATTCTTTTTCTACTATAAATAATTTTTATTAATTTATTTATTCACTTTACAGCCTGACCGCAGCCTGCCTCCCTCTAATACAGCTCCCCTCCTCTATATCTCCTCCCCTTCTCCTCTGAGAAGGGGGCTGGGGGGCTGGGTATCACCTGACCCTGGCTCCTCAAGGCACTGCAGTACTAGCTGTATCCTCTCCCACTGAGGCCAGACAAAGCAGCTCAGTTAGGGGAACGGGCTACGTAAAGTAGGCAACAGATTCAGGGACAGCCCCCACTCTATGTTTCAGCATAAGAAAATATTTATAGCTTTGTGTGAATTCACAGTAATCTCTGAATAGCCTGATTAAGCTCAGCCAAAGAACACTTCATTTTCATCAGTTATTTTTTAAAATTATTTTTAAAAAATGCCCGATTCACTCATAGTTTCTATTTTCAATGTAAAGCTGAGAGTTATAACATACTTTGCACAGAGTGGGGAAGAGGTGAATGGTTTGAGACTTATCAGCATACAAAGACAGAGACATGAAACAAACCTTGCACGCTCTGTTCTTGGATTCCCATGTGCACTTCTTGACCACCACATGTATACACAAGCCCCCAAATAGGTCTTCCAGACCACATCTCATCTTCATGTTTTATTAATTATTCTTTCAGTTTTGCTTGAGCAGTTTGGTACATCACTTTTTTTGGTAACCATTCTCCTCTTTCATTATTTCTTTATTTGGTGTGCTGTCCATAGTACCATCCCCAGGTAGGTATTACACGGCATGGAACCTTGGTCTTCCTGGGTTCATTCGCATTTCCCTGCTTCCTGCTCATCACAGCTCACTGCTCACTGTGTGTGTTTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGTGTGCTGGCAAACGCTGCTTATATTCTAGAATTATAGATTTTCCCTCAAATTAGCCCTTCTTCTGCGCTGCCCCCCCCCCCATGCTAAATGAGTAACTGCTGGAGTTAGGAGAACAGTGTCACAAGAACCAGCCCTGATTCCTGATTCTAACTCTTACAGCGCCACCTTGTGGCTGGCAATGCAGGAGCATGGCCCTTCCATAACAAACTTAGCAGCCTATCTATCTATACTGAGAAAAGACAGAAATCAACATTGGGGTGCCTAAAATAAGCATACATACAGAAAGATTAGAACACATACATTTCAATGCAGATGGGGCAAAACCACAGCCAGAGTACAGTCAGTTGGATTTGGATCCATTTATTATTGTTGCTTACAACTGTCCAAATACAAATAGGAAAACTCACATATTTACTTATTCAAAGGGGCTTCAAACTCTACAAATTGAATGTCTAGTAAGTATTATAGTTTCCTAAGCTAGTGATCGTTACACTCATTCAATTCTATAAGGCGGTTGTGTGAAAGTATAAACTGAATCCTTCTTTCTATCTATAGCTGTTGGAGCCTCCAAGTGAACAAGTACATTTTAATTTCTTTGAGCATGTTATTCTCAGTGCATTAACTCAACAGGAGGCCTCCCCGAAATGATGTCTTGTAAATGGAAACTCTGTTGTGACATGTTTAAACTTGTCTGTGATGTCGCCCACCAAATGTACTCAGTTTATGATGTAGAGATTTAAACTTTTTTCAAAAGTTTATTCTCGTTATTATTTCACCAGAGAGAATGATGTCTCTGCTGTTAGAATATTCCAGTCATATTTACTTCATTTAAGAAGATTCTGTGACATCATTAGGGGAGAAAAGAACAGTTAGGACACATGAGCTTGATTCACAACAGGCAGCAGAGACAGCGATGTGAGATCCATAAAGAAGTGAATACTCAAACTGTGGTCTTGTCCAGTTCCCTCCCTCTGTCTCCACACTCTAATATCTACCCTTCTCTTTTGTGGCTGTAGGCTACTTTGTTTCTTTCTTTCTGTTAGTCATTTAGGCAAGACAAAAACTTAATAACTCCCTCTACCTCCTCTATATCAAAACCAGTTGAGGAAGACCCCAGAAGACAGAGGCAGGACAATCAAGTGTTCAAGGCCAGCCTGGGCTACATCGTGAATTCCAGACCAGCCTAGATGTGACAGATTAAGACTCTGTCTCAGGAAAACAAAACTAATTATACCAACATAATGTCATTTGACTGTGCAGATTAATTAGAAGGACTAAGTTATGCAAAGGACAATTGTTCTGTACATTGCATTTGAGTCAATAATTTGGAATAACAAAGATCAGATTTATCAAAAATTCAAAACACTGAATTGCAAGGCCTTAATTGTATTCTGAAGCCCCACATCACTTTTGGTCAGCATCCGTTGGCGAATTGCCCTTGAGTTGGTGTGTGTCTGTCCTGCTCTTGCCTCTCATCCCCATGGCAACTCTTTAGGGATTCCTACAGGACACACAGGGCATGCAAAGGGGACAGTGTTCTCCTCTGAGATCACGGCACTGCTGCACTCACCCGAGGTAAACAGGAGGCGCCCCACTTCCACAGGAAGCACGCATTTGGCCACAGTTCATTTCACTCTGTACCTTCCAGGGGAGGACACTGACATTCAGCTATTCACAATGTGGAAAGGAAGGGAAAGTGGCAGGAGAAGAGAAGAGAAAATAAAGAGGGGAAAAAAGAAAAAAAAAACACACAACCCTGCCTTTTCATTTTGCTTTTGCTCTCTGAGTAGTCTACTTCCCACCAAATATTTTCCCATGGCTGCAGGGAGATTATTTAACACAGATTTAAGAACTATTGCCTGCATAAAAAATTTCCCCCCACTGGCAAATAAGTGACAGTTGCCGGTTTCAAACATTTCTGGAAAGAAAGCGAATCTGATTAGGAGTATCGAATGTAACTTGCGGATTCCCTTGTGCCCTTGCCGTTCAGCGTTAAGCACGGTCTGGGGATGCGTTTTGGCTGCTGGGCAGAGACCTGGGTAGGGCCACTCTGAGACCCGTGTCCCCTGGAAGTTGCACTGTTAGCTAATAGCAGGCTTTTTTCATTCTCCTGCTCGGCTCATTTCACCTTCCCAACCCTCCACCGCTGTCGGTACATGACCATGACCTGCCAACCTACCAG
Seq C2 exon
CCTCCGGTCCTTCAGTTCCGACAGGTCTCACACTCTGAGCCATGCATCGTACCTGAGGGACAGTGCCATGATTGACGACACGGTTGTGATCCCCAGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826:ENSMUST00000044443:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types