GgaINT0076304 @ galGal3
Intron Retention
Gene
ENSGALG00000009982 | ZNF827
Description
NA
Coordinates
chr4:32413055-32414880:-
Coord C1 exon
chr4:32414843-32414880
Coord A exon
chr4:32414077-32414842
Coord C2 exon
chr4:32413055-32414076
Length
766 bp
Sequences
Splice sites
5' ss Seq
GCGGTAACC
5' ss Score
5.41
3' ss Seq
AAATAATACTGTTATTCTTGGTT
3' ss Score
-4.11
Exon sequences
Seq C1 exon
CTGCCAGTTAGGTCTGAGGAGAAACCAGACGTATTGCG
Seq A exon
GTAACCCAGAAGAGAAAATATAACTAATCTTATTGAGACCAACACTTTATATTTAAACATATATATATATCGTTTGGGGTGGTATTTGAAACTTTGATGAAGAGTGACAAGCAAATGAAAAACAAATAGTGTAAAAAAAAAAAGGTTCTAAATGTATGATATTCCTCTCCCAAATAGTTGGAGAGATTAGAGCCTTAGCTTGTATTCATGTATTAGTCATTTCAGCTATTCAGACATGAAGTGTGTATTATTGGTACAGATTTTATTATATTTTAGATAGGGGTCACTGCAGGATTGGACTGAGATTTAAAGTCTCTGGAAGAAACTTCTTTGAACAGCTATACGCCTGATCTGCTTTTGAAGGCATGCCTGCTATCTGTACTGAGACTCAAGTATCCAATACTTTCTGGGCCTATTAAATCCTTGCTTTATACCACAGAGTTCGTAACGTTTTGCAGGATGTGCAAACTACTCCAGTAATAAAATCACTGCAATGTATGAGTGGTACCACGGTATATATTTATGTTGCTGCAGTTTTAGCTGTTTTAGTCATACTGACTGAACAATGACAAGCTACCATGATTTTGCCTTCAAATGAACCCTTTTTCATTTTCAAAACGCTTTTTCCTGATCACTTAATCCAGGCTGATGCCAAGTCCATGCACTCCAGTGGAATGTTAGGTGACTATTCAGGAGAGTTGTGCAGAGCCAAATATGCACTGAGGAGGTACTTTGCACAGATTTGGAAATAATACTGTTATTCTTG
Seq C2 exon
GTTCCATACAGATGGTACCAGACAGGAAGAAGTGGAAGGTGAACTCAGTGAAGAAGAACGCTGGTTTGGAAATTCTTCAGAGACTCCTTCAGAAGCATCGTATGGAGAAGTCCAGGAGAACTTTAAGTTGTCTCTTGAAGACAGAATCCAAGAGCAGTCCACTTCCCCAGATACTTCTTTGGGAAGTGCAACTCCTAGCAGCAACACAGCGGAGTTGGGAACCATTGAAAATGAAGCGCTAAGAGACACATTACAGAGCAAAGAGCACCTTTCTCCTGATGCATCATCTCTGTGTGAAGAAGAACCTCCTGGCTCAAATAAGCCACTGAGTAGCAACCTGAGGCGGCTGTTGGAGGCTGGATCCCTCAAGCTGGATGCTGCTGTTACAGTCAATGGCAGAGTTGAGTCCCCTGTAAATCTTGGCTCAAATCTCTCCTTCTCTCCACCTGCTCATCATGCCCAGCAGCTCAGCGTGCTTGCCAGAAAGCTAGCTGAGAAACAGGAACAAAGTGACCAATACAATGCAAGTAGTCACTTTATATGGAATCAAGGTAAGTGGTTGCCAAACTCAACCACCGCCTGTGGTTTGTCCCCCGATTCAGCTATCCTGAAACTGAAAGCCGCAGCCAATGCTGTTCTGCAGGACAGATCTCTTTCAAGGACTGAAGATAATATAAGGTTTGAATCCTTTTCCTCACCTTTTAGCTCTCAGTCTGCCAGCTCCACATTAGCAGCTTTATCAAAAAAAGTGAGTGAAAGAAGCATGACTCCTGGGCAGGAGCACCCGCCTCCGGCTAGTTCTTTCCTTTCTCTGGCTTCTATGACCTCTTCAGCTGCCCTGCTCAAGGAGGTTGCTGCAAGGGCTGCAGGCACCCTGTTGGCAGAGAAGAAGAAATCACTGGTTGCTGAGGATCCCCTGCAGCTTTCAGAGATGAAGCAAGAGAAAGCAACTCCACCACAGTCTTTGGAATTATTGTTACTGCCAGTCCCTAAGGGAAGAACATCCAAACCCACCAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982:ENSGALT00000032243:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.594
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGAGGAGAAACCAGACG
R:
TGAGCCAGGAGGTTCTTCTTCA
Band lengths:
344-1110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]