BtaINT0166140 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012738 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr17:12587397-12589221:+
Coord C1 exon
chr17:12587397-12587445
Coord A exon
chr17:12587446-12588168
Coord C2 exon
chr17:12588169-12589221
Length
723 bp
Sequences
Splice sites
5' ss Seq
AATGTGAAT
5' ss Score
-0.44
3' ss Seq
GATCTTCTTAATTCCCCCAGATG
3' ss Score
8.41
Exon sequences
Seq C1 exon
GTCCCTTTAAGAAGTCAGGGAGAGATTGTCCCTTTAAGAAACCAGGAAT
Seq A exon
GTGAATAGTGTTTGGTAGTGAGATCTCATTTTTGTATAGTACTCTACTGTTTTTTCAAAACATGGTCGCATGTTTATTATGATGGAAGCTTCAGAACAACTCTGTGAAATTGGTAGAATATCTAATAAGCAAGTTTTTATTTACATATTTTGATCAGTTAAAAAAAAAATGAATTGCATGTTCTATCAAGCCAGCTAAGTGACTGGCCTGAGGTGGAGTTAGAAAGCGAGAGGCAGTTTCCTACCGCCTTGGGTCTCATCATCCAGTTTCCCCCTATGTCTGGCTGTCACTTTCATTCCCACACGATCTTGAAGATCTCATGCTCACTTTTTACCTGGGCACAAGCTTCTCCCCATTTCCCCCATTCACTGAAAAGCAGTTTCTGCATCCAGTTTCTTCTTTACCAGCTCCATTTTCCTCATTCCTCCTCTTCCATTTCCCTTGATTTGAAATAATTAGAAAAGGATGAACGTGTGTAGAAGGTGGCTGTGCTTTAAACTGTGGCCCATTCAGCATCCTTTCAAGCTTAGGTCCAGAGGCTCTGACCCAGCCCCTGACCTGCTGGAAGGTTGTGTCTGTCTTTCGTGTGTTGTTGTTGTTGTTTTTTTTTGTGGGGGGTGGGGGCAGGGCAGAGGTAGCATGTCCACGACTCCATTTTTGCCTGTCTTCAGGCTTTCTTGTTGCTTGCTTTGGGAGTAAACCGGATCTTCTTAATTCCCCCAG
Seq C2 exon
ATGTTAGTAGGCAGGACGAGGCGGAGGGAGAACTCAGTGAAGGAGAACACTGGTATGGGAACTCTTCGGAGACGCCGTCGGAAGCCTCCTATGGAGAAGTCCAGGAGAACTATAAGCTGTGCCTGGAGGACCGGATCCAAGAGCAGTCCACGTCTCCAGACACCTCCTTGGGAAGCGCGACCCCCAGCAGCCACACGTTGGAGCTGGTGGCACTCGACGGGGAGGTCCTGCGAGACCCACTGCAGTGTCCAGATCACCTCTCCCCCGGCGTGTCTTCTCTGTGTGAGGAGGACCACCCAGGCTCCACCAAGCCCCTGAGCAGCAACTTGAGGCGGCTGCTGGAAGCCGGCTCCCTCAAACTGGATGCCGCGGCCACTGCCAACGGCAGGGTGGAATCCCCGGTCAACGCGGGCTCGAATCTCTCCTTTTCCCCACCGTCCCACCACGCCCAGCAGCTCAGCGTGCTGGCCAGGAAGCTGGCCGAGAAGCAGGAACAGAATGACCAATACCCTCCAAGTAACCGTTTCCTATGGAATCAAGGTAAGTGGTTGCCAAACTCAACCACCACCTGCGGCTTGTCCCCGGATTCCGCCATCCTCAAACTGAAAGCTGCAGCCAATGCCGTCCTGCAGGACAAATCGCTGACCAGGACGGAGGAGACCGTGCGATTTGAGTCCTTTTCCTCCCCTTTCAGCTCCCAGTCTGCCAGCTCCACCTTGGCAGCTTTATCCAAGAAAGTCAGCGAGAGAAGCTTGACTCCTGGCCAGGAACACCCGCCCCCGGCCAGCTCTTTCCTTTCCCTGGCTTCCATGACCTCCTCGGCGGCCCTTCTGAAAGAGGTCGCAGCGAGGGCTGCCGGGACCCTTCTGGCTGAGAAATCGTCACTGGTGCCTGAGGACCCTCTACCGCCACCGCCTTCGGAGAAGAAGCAAGAGAAAGTAACCCCGCCTCCTCCGCCGCCGCCTCCGCCGCCTCCTCCACCACCGCCACAGTCCTTGGAATTATTGTTGCTCCCAGTTCCCAAGGGAAGAGTGTCTAAGCCCTCCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012738:ENSBTAT00000016933:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=NA C2=0.733
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTTTAAGAAGTCAGGGAGAGA
R:
GGTGGTCCTCCTCACACAGAG
Band lengths:
345-1068
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development