GgaINT1030685 @ galGal4
Intron Retention
Gene
ENSGALG00000009982 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:30736938-30738147:-
Coord C1 exon
chr4:30738045-30738147
Coord A exon
chr4:30737949-30738044
Coord C2 exon
chr4:30736938-30737948
Length
96 bp
Sequences
Splice sites
5' ss Seq
TAGGTGACT
5' ss Score
3.75
3' ss Seq
TTATTCTTGGTTCCATACAGATG
3' ss Score
8.97
Exon sequences
Seq C1 exon
ATGATTTTGCCTTCAAATGAACCCTTTTTCATTTTCAAAACGCTTTTTCCTGATCACTTAATCCAGGCTGATGCCAAGTCCATGCACTCCAGTGGAATGTTAG
Seq A exon
GTGACTATTCAGGAGAGTTGTGCAGAGCCAAATATGCACTGAGGAGGTACTTTGCACAGATTTGGAAATAATACTGTTATTCTTGGTTCCATACAG
Seq C2 exon
ATGGTACCAGACAGGAAGAAGTGGAAGGTGAACTCAGTGAAGAAGAACGCTGGTTTGGAAATTCTTCAGAGACTCCTTCAGAAGCATCGTATGGAGAAGTCCAGGAGAACTTTAAGTTGTCTCTTGAAGACAGAATCCAAGAGCAGTCCACTTCCCCAGATACTTCTTTGGGAAGTGCAACTCCTAGCAGCAACACAGCGGAGTTGGGAACCATTGAAAATGAAGCGCTAAGAGACACATTACAGAGCAAAGAGCACCTTTCTCCTGATGCATCATCTCTGTGTGAAGAAGAACCTCCTGGCTCAAATAAGCCACTGAGTAGCAACCTGAGGCGGCTGTTGGAGGCTGGATCCCTCAAGCTGGATGCTGCTGTTACAGTCAATGGCAGAGTTGAGTCCCCTGTAAATCTTGGCTCAAATCTCTCCTTCTCTCCACCTGCTCATCATGCCCAGCAGCTCAGCGTGCTTGCCAGAAAGCTAGCTGAGAAACAGGAACAAAGTGACCAATACAATGCAAGTAGTCACTTTATATGGAATCAAGGTAAGTGGTTGCCAAACTCAACCACCGCCTGTGGTTTGTCCCCCGATTCAGCTATCCTGAAACTGAAAGCCGCAGCCAATGCTGTTCTGCAGGACAGATCTCTTTCAAGGACTGAAGATAATATAAGGTTTGAATCCTTTTCCTCACCTTTTAGCTCTCAGTCTGCCAGCTCCACATTAGCAGCTTTATCAAAAAAAGTGAGTGAAAGAAGCATGACTCCTGGGCAGGAGCACCCGCCTCCGGCTAGTTCTTTCCTTTCTCTGGCTTCTATGACCTCTTCAGCTGCCCTGCTCAAGGAGGTTGCTGCAAGGGCTGCAGGCACCCTGTTGGCAGAGAAGAAGAAATCACTGGTTGCTGAGGATCCCCTGCAGCTTTCAGAGATGAAGCAAGAGAAAGCAACTCCACCACAGTCTTTGGAATTATTGTTACTGCCAGTCCCTAAGGGAAGAACATCCAAACCCACCAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982:ENSGALT00000016223:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.806
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCCATGCACTCCAGTGG
R:
GTGGACTGCTCTTGGATTCTGT
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]