GgaINT0076310 @ galGal3
Intron Retention
Gene
ENSGALG00000009982 | ZNF827
Description
NA
Coordinates
chr4:32366721-32371102:-
Coord C1 exon
chr4:32371045-32371102
Coord A exon
chr4:32366825-32371044
Coord C2 exon
chr4:32366721-32366824
Length
4220 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTATCTTATTTCCCCCACAGCCC
3' ss Score
10.72
Exon sequences
Seq C1 exon
AAAAGGTGAGCAAAGAGCACAATCACAATAAAGATAACACCATCAGAACTACAGTCAG
Seq A exon
GTAAGCTCAGTCCATTGTTATCCATAAATCTGTAGTGTAAATGGCATTGCTGAGTTCTGCCTTGTGAACTTGGATATGTCTCTCTCTTGCAAATGTGACCTGATATTACAAGTGTAAGATATTTTCTTTTAGTAGTGGAACCTGTATGTGAGAAATGACATCAATAGATATGATTTCTTAGTGTCCATGTTGCAGAAGGCCTTTGGGCTAAAATGACTATTCTCCTCTGATCAAGTATTCACACTTGGTTTTAAGAATTGTTTTCTCTGTGTGCTTTTTTACTGCAAAAACTGAAGCTTAATTGAAACTGCATAGTATATGCAGTGCTTGAGGGAAGAACAGGCTGACAACTGGATTTTAAGACATGGACCAATGTAAGAAGAGGTGTTGTGATTCAGTCTTCTATCAAACTTGGATTTCTTGTGTAAAATTTCAGTTTAGTATTTTTGTATCCTCTCAATGCCTTCCAGAGATGAACTTTTAAAAGACTATAAGAGACAATGCTAATGAAACTTTTGTTCAGGATTACAGTCGCATTAACACAATATGTGAAATTATGCAGGAATTAAAAATATTGTTCGATTATAGCATGTGTTGTTAAAGAACTATTCCCTTTACTGTATTTTGGCTGGGAACAAACTGACAAGTTGTTTAAATATGTGAGCAGCAAAGTGAGGTGTCCTAAGGGAAAAATTTAAAGCTATTGTGTAATAATTGGCAGCTAGAATTGGTAAAAACTTAGGAGCCCGTGGTTAGAAGCAAGTAAGAAATTGACTTTGGCTCTCATTTAACTCTGGAGACAAGGATACGTACACTTATGTCCTCCCTGAAAGTTCAGTGGTCAGTGTGGGTGGTTTTGGAGACTGACTGTGGCTGAAGCATCGGAGAGTTCCTTCAAAGATAGAGTCAGACCTTCAGTGTCTCTGCAGCCCCTTCTGCAGAAATCCCCAGCACGTACAAAGTTTGATACAACGTGGTTTGATACAAACGTGGTGTTTGGTACAACACGTACAACTAAGGCAGCTTTGTCTAGACAGAATTGGAAAAGCGTTTCAGTTGCAGAAGAAAAAGTCTCTGCAATGTGCTCACCTTACATTCCTAGACCCATCCCTTTCTTTCATGGTAACTGTAATAAATAAGTTTTTAATAAACTGAACAACCCAGTAAATGTCCATTAGGGACTTTCTGATGTTACAGGTTGAAAGAGAATTAAATTGAGCTTTTTAACTTCTGGTTATTGTGAGTGCTTTTCATATTTGCTAGTTTGGGAACTTGTGGGATATGGAGACTTCACAGACTTCCCATTACTTCTTAAAAAGCATAAGCCTTAAAGATACTTATAGAGTTGAATGCACATATGTATAGAGTTGAATGCACAACTACTCATTAACCATCCAATATGTGTTGCAGGGAGGGGTGACAAATACTTGGTAGAAAATAGATTTTAGTGTCTTGTGATACTACCAGCAGGACTGGTGTGAGAATCCAGAGCTACTTTTGGATCTATCAAAAATAGTTCAAACTGGAGAGGTTGAGGACAGTTCAGACAACCTTCTTTCTTACAAGGCTGCTGCTGCCTTGTAAGAGAATAGCACAGTTGGCTGTTGTCTAACTTGTGCTGAAATGTACTGAGAAGTCCTGATAAAGGCTGCTACCCATCAGCGTTTGAGAAGCAGAGCGCCCAACTGAATTCTTGTGGGTGCTTTTCTTACCTATCTGTCAATATGAATAAGAAGAGCTTCTTAAGGAGAAGGGAGTCTACTCTAGTCTACAGCACGTTCTAACAGATTGACTCAAAAGACCTTGCCGAAAAAAGAAACAAAGCACCCCAAAGCAAACAGCTGGAAGTCTTTACTGGTAAGAGTATGACACCTCTCAAAAATAGAATGTGATGGAGCAGCCAGTGGAGAATAGAGGCACGAAGGCTGCATTAAGAAAACGTGTAGTGTTGCAGTTTGGCTCACCAACCTACATCTGGAGTCATGACAGGAAGGCACTGGAATCACAATTGTAATGTGAAGTTTGCTGACAGCTGCAGAGTCAAGGTGAGGTCAGTGTCGTCCACCTGTGAGTAATCGGCCAGTGGAGAGATTCAGCTGTGTCATTGGCGAGAGTCTTAAATCAGCAAAGTCCAGCAAGATGGGGGTACACAAGCACTTCTTTTTTTAATATCTTATTCCATATTAACATTTCTGTCTCCCGTCTGTTGCTATTCTTCCTGTGAATATTCCTGGACTGTGTAAGCATATACTTCCATATGATTTTGCTCAAGCAGCCAAAACTGGCAAGGATTCCTCGCAGTTCAATGGCTGAGTGAGATGGTGGAACCTGCCATCTGTGATAAGAAGAAAGAAAGCGGAGAAGCAAATGATCTGGAAGTGAGTACGCCAGCATGAGATGCCAAGATAAGTTTCTTTCATCTAGAGAACTGTGTAGACAGAAAACTGGAAAAGTGCAGCCAGAAGAAAAAAAAAAAAAATAAAGCTTAATCTTCATCAGAAGGGACGTTACATAGTGATTGAGAGCAACATGTGTAGTTTCTGTGTTGCAGGAACTCTCTGTTCATACTTTGGATTGGGAATTGGAGGGCATACCCACTGAAATAAACACAATAATAAGCTGACACTGAAGAGACTCATCTGCCATTCTACACAAAGGTTAAAAAAATAAAAAGGCGTATCCAAGGATGGTTCTGTAATTCACTGAAGGCCAATGTCAAAGAGGGGAGATCTTTAAGACAACAGCACAGTGCAGTCTTCAGCAGCAACCTACCGAGGATTTATATCCTAACCTGAAATAGATGAGCTCTGCATCATTCACTTTGTCTAGAACTAGCAATGCAGCGTGCCAGTGAGCGAATCTATGACACAAGCAGGCAGTCCAACGTGGAAAGCTGAGTGGATACATGATTTTGAAGAGTTACAACGGTTACCAAACTTTTTTTATTGGTGTTGGTTTTTTTTTCAAATCATTATTAAGCCACTGAGAAGAATGTTGCAGTGAATTATGCCACATTTTTATACAGCATCAGTCTGTTTTATATTATGTCACCCCTGAGGGGGGAATAGTGTGAGTCTTGGAAAAGTTAACTTTTGCACACGTGGCCTGCAGCTCTTCACCTTGTCCTGATTGATCAGGTATCTGCATGCTGTGAACTGCTCGAGTTTGGGGCAGCTTCATGCTTTTCATCCAGCTCAACCTGTTTGACTGTTTATGGTTATGTTCAAACTTAGACAGAAATAGCAAAATATCCTACTAACTGTCACGTATAGAACAGCGAAAAATAAATAGTAGTAAAAAAACAAATAAAAACCCCTGATTTCTCAGCCTGTTGAGGAATCTCAATACAGTACAGATCAGATTAAATTCCCATTCTGCTAAGAAGAAATCCATCCTTTGTATGCAGATGGAATATAATATGTTAGAAAACAGCTGTCCAAAAAGAAGTACCCATTTATGATGTCCATTTTTGATTTTTTTATGTACTTCTACAGATGTCTGTATTGTGGAGAAGGGATCGTAGTTTCTGTTACAACATTAATTGAGCAGAAAACAAAATACTTCCACAAAAATGCCCATTCACTGCTGGAATTAACTTTTTACCTCCTGTTAATTAAAGCCAAAGCACAATGTACTGTTTAGAATCAAGCAGCTGGTGATTTGTGCTCTGTTTGGGAAGTCACCATCCAGCTAACTTCTGTGTATTGTTTCCTGCTCTAAAAATGCAATTAATTGAGTTAATTTCGTAAGAGGAATGCTCTGTCAATAGAGAACAGTTCAGCATCTCAACCTAAAATTTGAAAAGCTTTGTTTCAAATGTAATCATTGTATTCCTCAGGTTATTAAATACTTTATACTAATTAGCATAAATACTAATATATTTTCCACATGTTCTGGGAGTAGAATACAGATTTTTGAAACATGAATTTTCTTGACTTATGTTGTGATGTGATATAACAAATCTGAGTTGCTGAAATGCTGTAATGAAAAACATTTTGGGAGGACTTCAGTTTTTGCTCCACAGTGCAGTTTTCCCAAAGCTTGCCTCTTCTCCACACCTCACCTCACCGTCTGGTTCTTTCAGCGTGAATTCCGTGAATTAAGCAGGGCTTTTAACAAGATGGTATTTATTATATTGAGAGGTTAAAGTTAAAAATACTGATTAGTTTTTCTATTAACAGCTGTTCTGTTTACAAAAAGTTATCTTATTTCCCCCACAG
Seq C2 exon
CCCTTACTTTTCTGAGGACACCTTTAGACAATCACCGTTCACTTCCAACTCAAAAGATCTCCTGCCTAATGAAACTGCTCTTCATGGAAGGACATCTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982:ENSGALT00000032243:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]