GgaINT0077023 @ galGal3
Intron Retention
Gene
ENSGALG00000013641 | MTMR7
Description
NA
Coordinates
chr4:64954320-64957007:+
Coord C1 exon
chr4:64954320-64954448
Coord A exon
chr4:64954449-64956872
Coord C2 exon
chr4:64956873-64957007
Length
2424 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
ACTTGTTTGTTTTTCTGCAGGCC
3' ss Score
11.16
Exon sequences
Seq C1 exon
GTCTGTGACTCCTATCCTACAGAAGTGTATGTACCAAAGTCTGCTACTGCACACATCATAGTGGGGAGCTCTAAATTTCGGAGCCGAAGACGTTTCCCAGCTCTTTCCTACTACTGCAAGGATAACAAT
Seq A exon
GTAAGTGTGAGTTTGGAGCTTCCAATATGCAAATTTTGACCTTGCTTTTGTAATTCTTCTAGTAAGCTTCTGTGAGGAGAAATCAGTGTTTGCTTTAAAAAAGTTTAAAAGGTGGTTAGGATAGTCTTTCCTTTATAGTGATACCTGTCCTAGGTTTAAGCTTCAGAAAGGTGGGATGAGACATATTTTTGACTCCTTCTTTACCACTTATTTCAGCAGAATTCTGCTTCATCAAAGATCTAAGAATTTGTTTACCAAATGGGAGGATATGAAGATTTAAATAATTAATAGTCTACACATAAATGATATATTGTCTTTTATATTTAATTAAGGACAAAATTTTCAAAATTAATCACTTTGCATAATCAGCTAGGTCCAAATACAGATACTCAGCATGCAAAACACTTGGACGTTTCCAAATATTAGTGAAAGAAGAAGTCTAAAGGATCAACTAAGTTCTGGCATATAGTGGTCTGGCTTGGGTAAGTTCTACAGTTTCAGCCTAGATGGTTTTTCCGTTTGTGGCTGGAGTTCAGGTTAAGGTTAGGATTCATGTTCAGGTCACTAGGGGTCTGAAGTATTGTGTTCACTCCTTGATCTTGAAAGGTAAGGAGTGTTGGAGTACCTCCGTGTGAGTTCGGAGTTGGCATGAGTTGCCAGATAATAGAGCAATGGGCAAGAGAAGGGTAAGTTTTGTGATGGTAGACAGTGAATAACTCCAGGAACAGCATGTTGGGAAGAGGTCTACAGAGAGGTGGGTACCACTCATTCAGTCTTTCATACCTGGAACGGTCACATTGTAATTTGGTTATTCACAGATTCAAATGATGTTGTGGCACCACTCTGTGTCTCACAGGGTCTTTGTAGCTATGCTGAGATCAAAGTCTTGAAGTATCTTTTCAGCCAGGGCACTTGAAAGCAACCTGATCTTATGCCCTACTCTCAAACACACCCCAAGAAATTTTTTAGATGTACGTGCTCTTCATAAGCAATTTGCCTGGATTAAGTCCTTCATGGAGATCACTTGTAATGATTTCTGATTGAGATATCTAATGGATGATTAGGCCAATTTATCTTCCCAGTTCTGCACTACTGAAAGTGCAGCTGTTTCATGAGCTTGGGCTATATGTGATCTTAACCTGACAGACAAGACGTTCTCTCCTTCTGGTGCCAACACATATCTTAGTTTGTGGAGCACAGGCAGTGCTGTAACGTAATGAGTTCTAGCCCCTACTTTCCTGAACCTTAACCTTAGTCTGCAACTCTAATTTTAGTCTTAATCTTGAGGTATGTATCTACCTCAGGTATGATATGCCACGATTGAGCGACAAATGTCGTCTTTATATTGAAATGATAGGTTGTGAATTAATCCATATGTACAGTTTTCAGATTACTGAAATTTACTGAATTCTGTAAACTCAGTTTACAGAAGTATTAGCATGTATTAAATCACTGTGATATGCACTGATCAGCAGGCAAAAGTAGATAACTAATAATTTGTTGGCAGAATCTATTACTGATATCTGAGCAAGCTCCCACACAGTTTTGTACATTAAAGATCCTATTTACTAAGTACTGATAGTTCAAAAACTTGGCTGAAAATGAGCGTGTTCTCTCTTAGTAATAAATAATCTGTTGGGCAGCCTGCATGGGTTATGACCTTCAGCAGGCAGATTCTCTTCATGCTAATGTTCAGTGCATAGAAAGTGCCTACATCAGCCCTGTGCCCCTATGGCTCCAGCTGGACTCAGCCAAGCAGAAACTGGGAAATATGATCTCCTTGTTCCACGTTCAGTTCCTTCTTTCCAAGTTTCACCTGGAGATCTGATTCTGATGTGTCTGGGGAGAACCTCTCTTGACTTTTTCAATTGCACTGATTAATAAATTTGCTCCAACACTCAGGCTGCCTGACTCACTTCCTGTGTAGTGAGGTTTTTCTCCAGAGGCACTGCTAAAAATACAGCACAGTGATCTGGCTGCACAGTATGTACACATTTTTGTTTCCTGGACTCGTATCTCAAACCACTCAGTAAAGAGCATATTGGTGTAAGCTGGGTGTAATTAATATCATAACTGAAGTGTGAGTGACAATGCAGAAGGATCCACTCCTTAAGTTGTGATGTCAGTGTTCTTGTGATTGCGCTGCTATACTCATTATTCTCTAGCGATTGTCTTCAGGAGATAATCCACAGGAAGGAAATACTACATTTGAAATAGCTCTAGAACTTTGATTCAAGACCTAGGCAGTGGGATTTTATTGCCTTAATATTTTCTTGTCTTTCTAAAAAGAATGTAATTCTTTTTTACCATTCCCACATAACCATAATTCTATGGTAAACATCTAATGAGCGTCTTTAATAAATGCTTCGGGTTGCTAATTGATTTCTGCTTAATAACTTTACTGACTTGTTTGTTTTTCTGCAG
Seq C2 exon
GCCTCAATATGTAGGAGCAGCCAGCCTTTATCCGGCTTTAGTGCTAGATGCCTGGAAGATGAACAGATGCTTCAGGCCATCAGAAAAGCAAACCCAGGAAGTGATTTCATATATGTTGTTGACACTCGGCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641:ENSGALT00000022188:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.2=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]