Special

MmuINT0102008 @ mm9

Intron Retention

Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:41672402-41675892:-
Coord C1 exon
chr8:41675764-41675892
Coord A exon
chr8:41672537-41675763
Coord C2 exon
chr8:41672402-41672536
Length
3227 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
GCTGTGGCCTCTCCCCGCAGGCC
3' ss Score
11.93
Exon sequences
Seq C1 exon
GTTTGTGACTCTTACCCCACGGAACTGTACGTCCCCAGATCGGCCACGGCACACATCATCGTGGGCAGCTCCAAGTTCCGGAGCAGACGGCGATTTCCTGCCCTTTCCTACTACTGTAAAGACAGCCAT
Seq A exon
GTATGTCTCAAAGCGGGCCCTGGTTTCACACTTCGCGTTTACGTCTTAGCCTAAATGGGGATTTTTCTAGTGTCCCCTTGTGTCCGTCTGTCTTTGTCTCTTTCATTTTTTTCTTTGTTTATTTATTTAAATTCTTAGTGGCACATGAGTACCCTGTGAATGGTGTGAGACAATCTAGTTCCATGTAGAAACTTTGCCTTCTATATGTATTTGGCAATAAACTGATGGTAGACTCAGACAGTACCCAAGTGTGATCAGCCACATGAATGAAACCATCCCCTGTGGAGGGGCCTGGCTTTGATCCTGGGATCCTAAAGGAGGCTGTAGTACCAGCCATCACTTCCCCTCTCCTGGCAGCGGATGAGGAGGGATGGCGTGCTCCCACAATTTAAAGGAAAATTCCGAGAAGCAAGGGCAACATTTCTGCTCACATCCTAGTTACCAGAACTATGTGCAGCAGGCATGAACATGCAGTCTTGTGGGTAGCCATGCAAGAAACCAAAATTTAAAGCTTTATTTCCAAGGAAGAGAGAAAAACAAATTTGGAGGAAAAACAGTGGCCTTTGCCATCTGCTATAAAAATTATTTGACTCAAGCCAGGCAAAAAAATGTTTGATTTTTCATGGTTAATATAGTTTTATATTCAAAACCAAGTGATGCTATGTGTGTATCATTGTGTGTACATGTGTATGATTGTGTGTGAGTGAATGTAATCGACCTACAGTCAAGGTGGAGCAGCAGCTGTCAGACCAGACAGGAATTTTCTAAAAATATTTTGAGCAAGGCAGCTTCACCACCAGGCAGCACACAGCCTTCTGTGTTGCCTTCTTCAATAGAAAATACTCACTTGGTGGTGAGTTCTGTCCTTTGAAAGGATGCATTTTCATCCACTGTTCTTGCTCTATTCTTCTCCACTTGATGGGGTCTGGAGAACGTCCACTTTTATCTGTGTTATTCAACTCCAAGTATGTTTGAGGCCACACAGGAATGGAACAGTGTTTTGAGCAAAGGGTGACTCCCCCTTTTTAAAAATAGAATTAGTAAGGTTATGAGATTCTGTGTTGTTATACTTTAAGCTGGGATGCCAGTAACATTCAGACTTTGTGGTTCATTGATGAGGTGAGATAGGGGTGGGATTTAGATGAGGGGAGAGGATCACTTCTCCTTTCAGCAGTAGGATGGAGGGGTGTATTTAAACAGTGAGCCCAGGTGTTATGCTACTTCCTTTTCAGAGAAAAGTGAACCGTTCTTTGTTGGTATGAATATTGTTAAGGGCAGAGGTGTAGTACATCAGACTGGATCGGATCTTCAGGAGGTAGGCCTCAGAGGTGGGCCTTGCTCTAACGTTCTTCATGATGAGTTTCAGATCTGAGGGTGAACTTGTCCCGCAACTGGATATATTGCAGCGTTAGTGGTCCTCTGCACCGAGCTTTAGCTGTTCTTGCGTGGTATCACATAGACATGTTTCCAAGCATCTCTTTGTCATGTTGTCACTCTGGAGACAGCGGCTGTGTGACACTTGGGCTCCCATTTTCACATCTCTGTACAGTCTGGTTTCAGGGTGGAATAGTAGTCATTTTTGTGTTTTATAACGATATTTGGAATGCAGCATCATGTCCAAATGTCTGAGTGCTTCTGGGCAAGCTTGTCCTTAAGGAAGTACCACGGCTGAGTGTGGACTTCTGTGGCTGAGGGAAAGTTGGGTGAGGTGGCTTGTTGGCTTCCCACGCTCTCATCGCTCATACACCCCATCTGCTGGATAACGGACCATGAGGTTGACCTGGGAACAGTGGAAGAGGAGGCTCTGGGAGTCAGGCCTTGCAGTGTCATGACAGGGAGGTCATCCTGTCCCTGCAGGACGTTTGCTGATGTGTTGTAACTGTAGACTGGTGGGGAACTGAGGCCCCATACTTAAGCGAGCAGAACACTTATGTGACGTAGATGCTTGCATCAAGCTTACACAAAAACCAGGGGCTTCTTGGTTTTACCAGGTGTCAGGGTACCCTATAATATTAATTTTAAGCCAGTTGTTGTATGTGGGCCTTGTTCCGCCCCCTCCCTTAACTCCCTCTGATGTCAAACCACTTTATAGGTCATGCTTAGAGACTTTCACTTATGAATAGCATTCTGGGTATGGTTTTTACTGAGAGTCACTTAATCCTTTGCTCTCTGTTACCATGCTAGCAGTTTTAAAAGTCACTTTACTTTAAATTGTGTCCAACATGGTCTCCTAGCTTCACATCATGAATTCCCAGTGGGGCGGGGGCAGGGGGCTTGGACTCATAGATGATTTCTAGTCTGTTAAGACACATTTTCCGAAGCATCAAGCTGTCCATGCTGTCTGTGGGGATGGGTTCTAGAGCTCACCAGTGTCCCTGCATGGGCTCGTCCCTCACCTAAAGTGGTAATGTTTGCATGCACTCTGCTCACACCCTCCTGCATACTGTACATCAGCTCCTGATTGTTTCAGATGCCCAACCAAGGTAAATACTTGCTATGGTGGGATATTTAGGGAAAGGCGACAGAAAGTCGATTCAGAGTCAGTCCTTTTAGTTGAATACTTTTGATCCGTGGTTGTGGAAAGCTATAGCTGACTAAACCCACCGGCCTAGGACCTGGTGACTGGAAAGACAGACGGAAAGATGTTTGTATGGTGTTGGAAACGAGGGTCAGGGAAATGGTGGGGTGTGCTGAGATGGGGTCTGAAGAGACCCCTAAACATCCCTACTGGGCAAACCTAGCAGTAGCCTGGGCTTTTATTACTGTGAAAATGTGACCTTTAGATTTGATTTGGGTACTCATGATTCTTTTAAATAGACTAGTATATTAAAAAAAAAAAAGACAATAAGCACCAAATAAGCACTAAAATTGTTTCCCTAGTCTTTCCACTAATAGTGCCTTGTAAGTTTCAGGAAAGTGATTATTCTGCTTTCAGCAGTGAAAAACATTATTACTAAAAAGGAAAGTAGGTTGCTTAAAAAGTTTTAAATTCATGGTATGGATCCTACTTAAACATTTCCACACATTCCTAATACCTTACACAGAAAGCTTACCCAGGTAGCAAGCTCTTCAGCTTGGGTTAAAAGTAAACCTATCTTGATTTCCATAAAATCCAATACCATTTTCCCATGTTGGTGTGGAGTGCAGGCTAACCACAGGCGCCTCTTCCTGGGGATGCTCCCACAGTGTCTCTGACAGTTCTGTGTTGCTGTGGCCTCTCCCCGCAG
Seq C2 exon
GCCTCCATCTGCAGGAGCAGCCAGCCCCTTTCCGGCTTCAGCGCTCGGTGCCTGGAGGATGAGCAGATGCTCCAAGCCATCAGGAAAGCCAATCCTGGAAGTGACTTCATTTATGTCGTGGACACAAGGCCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431-Mtmr7:NM_001040699:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF066029=Myotub-related=PU(11.9=97.1)

							
A:
NA

							
C2:
PF066029=Myotub-related=FE(12.8=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000043851





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000043367, ENSMUSP00000134020, ENSMUSP00000134281, ENSMUSP00000134731
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr8:17341498-17348952 
ALTERNATIVE
HsaINT0106311
(MTMR7)
Human
(hg19)
chr8:17199007-17206461 
ALTERNATIVE
HsaINT0106311
(MTMR7)
Rat
(rn6)
chr16:54815047-54820345 
LOW PSI
RnoINT0095413
(Mtmr7)
Cow
(bosTau6)
chr27:18974273-18983574 
LOW PSI
BtaINT0096150
(MTMR7)
Chicken
(galGal4)
chr4:62717309-62719732 
LOW PSI
GgaINT0077023
(MTMR7)
Chicken
(galGal3)
chr4:64954449-64956872 
LOW PSI
GgaINT0077023
(MTMR7)
Zebrafish
(danRer10)
chr14:30061031-30063185 
LOW PSI
DreINT0098748
(mtmr7a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"