RnoINT0095413 @ rn6
Intron Retention
Gene
ENSRNOG00000011420 | Mtmr7
Description
myotubularin related protein 7 [Source:RGD Symbol;Acc:1306608]
Coordinates
chr16:54814918-54820480:+
Coord C1 exon
chr16:54814918-54815046
Coord A exon
chr16:54815047-54820345
Coord C2 exon
chr16:54820346-54820480
Length
5299 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
GCTGTGGCCTCTCCCTGCAGGCC
3' ss Score
11.23
Exon sequences
Seq C1 exon
GTTTGTGACTCTTACCCCACGGAACTGTATGTCCCCAGATCGGCCACAGCACACATCATCGTGGGCAGCTCCAAGTTCCGGAGCAGACGGCGATTTCCTGCCCTTTCCTACTACTGCAAAGAAAGCCAT
Seq A exon
GTATGTCTCAGAGCAGGCCTTTGTTTCACACTTTGCTTTCATGCCGTATCCTAAATGGGGATTTTTCAAGTGCACCTCCACCCCTGTATCTGTCTGTCTAACTTTGTCTCTTGGTTTTTTTCTGTGTGTATTTGTTTAAATTCTTAGTGGTACATGACTATCCTGTGAATGGTGTGAGACAATCTAGTTCCTTCCTTCCACGTATATTTGGCAGTAAACTAATGGTAGACTCAGACAGTATCTAAGTATGACCAGCTATGTGAATAAAGTGTCCCCTGTGGATGTGCCTGGCCTTGATCCTGAGATCCTAAAGGAAGCTATCACTTCCCCTCTCTGGCAGTGGATGAGGCGGGATAGCACGCTCCCACATTTTAAAGGAAAATTCCGAGTAGCATGGGCGACATTTCTTCTCACATCCTATTTACCAGAATGATATGGAGCAGGCATGAGCATGAGGTCCTGTGGGTGACCATGACCCTAGCCAAAACTTAAAGTGTTATTTCCAAGGAAGATAGGAAGACAAATTTGGAGGAGTAACAGTGGTCTTTGCCATCTACTATAAAAATTATTTGGCTCAAGCCAGGCAAAAATGCTTGATTTTCATGGTTCATATAGCTTTATGTTCAAAACCAAGTGATGCTCTGTGTATGTACATGCGTGTGATTGTGTGTACATGTGTGTGGTTGTATGTACATGTGTGTGACTGTACGTGAGTGAGTGTAAATATACCTACAATCAAGGTGGAGCAGTGACTGTCAGATGATTTAGGAGGCTTTTAAAAATACTTTGAGAAGGCAGCTTCCCCACCACAGGCAGCACAGAGCTTCTGTGTTGTCTCCTTCAGAAGGAAATACTCATTTGGGGGTGAGTTCTGCTCTCTGGAAGGATGTGTTTTATCCACCGTTCTTTCTCTATTCTTTGCCCTGAGATGGGGTCTGGAGAAAGTTGACTTTTGCCTGTATTATTTAACTCCAAATATGTTTTAGGCCTCAGGAATGGAAGAGTGTTTAGAAGCAAAGGATGCTGTGACTCTTCTTTTTTTAAAACTGGAGTTCGTAAGGTTATGAGATTTCATGTTGCTATACTTTAAAGTGGGATGCCAGTGACAGTCACACTTTGTAGCTTATTGATGAAGTGAGACAGGATTGGAGTTTCGGTGAGGGGTAGAGGATTATCCCTCCTTTCAGCAGTAGACTAGGGGAACATAGGTAGCTCTATGCTACTTTGTTATCAGAGAACAACGAGCCCTTCTTGGTTGGTGTGAGTGTCATAAGGGCAAAGGAGTAGCAGTTCAGACAGGAGCCAATCGTCAGGAGGTAGGCCTCAGAGACAGGCCTTGCTCTGATGACCTTCATGATACGTTTAGGATCTGATGGTGACCTCCTCCCGCAGCTAAGCATGTTATGGAGTCGGCGGTCCTCTGCACTAAGGTGTTAGCTGTTCTTGCAAAGGTATCACATAGGCATGTTCCTAAGCATCACTTCATCATGTTGTCACTCTGGAGACACCAGCTCTGTGACATTCGAGCTCCCATGTTCACAGCTCTGTGCAGCTCTGTGCAGGTAGAAGAATAGTCATTTCTACTTTCTGTAACGATATTTGGATAGCAGTATCATGCTCAGATGTCTCAGTGCTTCTGGGCAAGGGCTTGTCCTTGAGGAAGTTCCACTGCTGAATGTGGATTTCTGTGGGTAGTGGAAGCAGGGTGACGTGGCCTGTTGGCTTTCCATGCTCTCATTGCTCATATGACCCATCCATGTTGAGGTTGTACTGGGAACAGTGAAAAAGGGGGTGCTCTGGGAGGCAGGCCTTGCAGTATCATGACAGGGGAGGTCACCCTGATCCAGCGGGAGGTTTACTGTTGTGTCGTTGCCGTAGGCTGGTGGGGAACTGAGGTCGCATAGTTAAGTGGCCAGAGCATGTATGTGAGGAAGACTCTTGCATCAAGCTTACACAAAACCCAGGGGCCTGTTGGATTTACCAGGTATCAGGGCACCCCATAATATCACTTCTAAGTCAGTTTCTGGACAAGGGCCTTGCGGAGCAGTTCCACCCCTTCCCTGAACGCCCTCTGGTATCAAACCGCTCGATAGGTCATGGCCTTTCGCTTATGAAGAGCATTCTGGCTATGGTTTTCACTGAGAGTTACGTCATCCTTTGTTCTCTGTTATTATATTAGTGTTTGTAAAAGTGATTTTACTTTGTGTACAGCATGATCGCCTAGTTTCACAGCATAAATTTCCAGCGGGCGGTGGGGGGTGACTCATAAATGATTTTTATTCTTAAGACACATTTTCCTAAACAACCCAGGCTTCCTTGCTTTCTGTTGATGCGGCCTCCTCAGATGCCTCTTTGCTTTACGTTCCCCTGTTACTGCCCTGCTGAACTGTGACCCTGGCTGGAGGCCCCAGTTTCATTGAACCACCACACCATTGCTTGTCTGCTATTGAGCTGTTCTGGATCCCTCTTAGTTGTCAGACTCCCATCTCACAATTCTTGGTCTTTGGCGTAAAAGAGGAGCTGAGTGTGGTAGAGCATGCCTCAGGAGACAGAGGCAGTCAAAGCTCTGACTTCCAGGCTCATCAGGTTTAAAGTAAGTTAGAGGCCAGCCAAGGGTACACAGTGAGCCTCTGTCTCAAAATCTCAGTCTCAAAATTTAAAAACAACAACAACAACAACAACAAAAAGACTTTGAGAAAAATCCAATCAACTAAACAAAACCATCCCACCTCCTCCAAGACAGCATTGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCCCCCCAGCCCCCAGAGCAAACATGCTAAGGCCAAGTTTCTGGATTGGTGCCCTAGTTTACTTATTGCTATTATAAAAGAACAGCATACACTGAGCAAAATCAGCCCTGGGGAAGGAAGAGTATTTAGTTGGCTTCCATCACTGGGAGAGAAACTAAGGCAGGAACCTGGAGTTAAGACCTGAGACACAGGCCCTAGAGGAAAGCTGTTCAGTAGCTTGCTGCCCATCACTGTTTACACAGTCCAGGGACATAGTGGTCTGAGTTCTCCTACATTAATTGTTAATCAGAAGATGCCCGTGGGCATGCCCACAGGTCAGTCTCTTGGAGGCAGTTCCTCAGTTGAGATCCCCACCCCCACCCCATGTCTAGGTCTCTGTCAAGTTGACAGAAGCCAGCCAGCATGCTTGAGAATGCAAGAAAGCTGAGTTTGACATTAGAAGGTGATTCCCTTTTGTGGTAAAAGAGGTCTGTCTACATGCAAGACTCCAAGCAAGCGATGCATGACGGGCTATTAGGGTTCTGCCTTCCCAGCTCCCATGTGCCTCCCAGAGTGCATCCATGGCCTCTTTATCCTTCCACTCAGCAGGTCACTCACACAGGAAACTCAGCTAGGTTTACAAGTTGTATGACATGTAAATTAGATTTCAGCAATGCCATTTAAAAGAAAACACAGGGATAAAAATCAGAACACAGGAAAGAGAAAATAGGCTGATGACTCAAGCCAACTTATATGCAAATCCATGACATTGACACTTAGAGAACCAGTGTGGATTTTTTTAGTCATTGTGCATCTTAGCAACAGAATTATATGTATTTTAACCGTTAGAAGCTAAACACAAAAACATTTTGCCAGAATGGAAGTTTAACGTTGAGCATCTGTCTCCTCTCCCTTATACATGGCGGATGACGTATCATCCAACAGTGTGGTATCAAGCTCTCTGTGCTGTCTGTGGGGACGGGTCCTAGAGTTCCCTAGACACAAGTGTGTTTCTGCATGGGCTTGTCCCTCTCCTAAAATGATAATGTTTGCACATACTCTGCTCACACTCTCCTGCATACTGTATATCAGCTCCTGATTGCTTCAGATGGCCAGTCAAGGCAAATACTTGCTACAATGGGTTATTTAGGGAAAGACGGCAAGAAGTCGATGCAGAGTCCTTTTATTTGAATACTTTTGATCCACAGTTGTCTAAAGCCATAGCTGATAAAACCCACTGGTGTATGAAATGGAAACAGAAGCGGAAAGATGGTTGTATGGTGTTGGGAATGTAGGTCTGAGAAATGGTGGGGCATGCTGAGATGGGGTCTGAAGAAACCTTTGTTTCTAAACATCCCTATTGAGTGGGCCTAGCAGTAATGTGGGCTTTTATTACTATAAAAGTGTGACCTTTAGATTTTGTGTGTTCATGATTCTTTTAAATAGACATACATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATGTCAAAAAACACTAGTCTTGCCACTAATACTGTCTTGTAAATTTCAGGGAAGTAATTATTCTGCTCTCAGCACTGAAGAAGAGCACTATTACTGAAAGGGAAAGTAGATTGTTTAAATAGTTTTAAATTCATGAAATGGATCACATTCCTAATACCTTACCCAGAAAGCTTACCCAGGTAGCAGGCCCTTCAAGTTGGATTAAAAATAATCATGTCTTTGATCAAAATGTGAATGCTTCACTCCTTCTTTAAAAGGGGAACAAGAATACCCTTGGCAGGGAATAGAGAGGCAAAGTTTAGAACAGAGGCAGAAGGAACACCCATTCAGAGCCTGCCCCACATGTGGCCCACACATATACAGCCACCCAATTAGACAAGATGGATGAAGCAAAGAAGTGCAGGCCGACAGGAGCCGGATGTAGATCTCTCCTGAGAGACACACCCAGAATACAGCAAATACAGAGGTGAATGCCAGCAGCAAACCACTGAATTGAGAACAGGACCCCCGTTGAAGGAATCAGAGAAAGAACTGGAAAGCTTGAAGGGGCTTGAGACCCCATGTGAACAACAATGCCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCTAAAGACTATACATGGACTGACCTTGGACTCTGACCTCATAGATAGCATTGAATATCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTGGGTCCTGCTAAGACTGAACCCCCAGTGAACGTGATTGTTGGGGGGAGAACGGCAATGGGGGGATGATGGGGAGGGGAACACCCATAGAGAAGGGGAGTGGGAGGGGCTAGGGAGGATGTTGGCCCGTAAACCGGGAAAGGGAATAACAATTGAAATGTAAATAAGAAATACTCAAGTTAATAAAAAAAATAATCATGTCTTGATTTCCATAAAATCCAGTCCCACTTTCCAAGGATGTATGGCCAGTAGGCTAACCAAAGTTGCCTCTTTCTGGGATGCTTCCAAAATGTCTGACAGTGCTGTGCTGCTGTGGCCTCTCCCTGCAG
Seq C2 exon
GCCTCCATCTGCAGGAGCAGCCAGCCCCTTTCCGGCTTCAGTGCTCGGTGCCTGGAGGATGAGCAGATGCTCCAAGCCATCAGGAAAGCCAATCCCAGAAGTGACTTCATTTACGTCGTGGACACGAGGCCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011420:ENSRNOT00000065327:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.2=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]