GgaINT0077110 @ galGal3
Intron Retention
Gene
ENSGALG00000011604 | SLC4A4
Description
NA
Coordinates
chr4:51858424-51862586:+
Coord C1 exon
chr4:51858424-51858496
Coord A exon
chr4:51858497-51862517
Coord C2 exon
chr4:51862518-51862586
Length
4021 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CCTGCACTTTTCCCCCGCAGTTC
3' ss Score
10.49
Exon sequences
Seq C1 exon
GGAGCAGAGAGTCACTGGAGTCATTGTTTTCATTCTGACTGGTGTGTCTGTCTTTATGGCTCCTATCTTGAAG
Seq A exon
GTAAGCACATAACCTTTTCTTCTTCCTTCTGCTCACACAAGTGCAAGCAAGCAGCCAGGACCACAACTGGCACACCATTTCTGTGCTTCTAAAAAAGCTCAATGCTGAAGTATGGAAAAGTAGTGAGAATCACTGCTGCAATTCTACAATTTAATGAAAGCTTAAATGTAAATTTTTGGAAGGAAAAAAATAATGTATTTGTGGTGTGCTATAGATATATGGATAGTACCAAGGTTCAGGGCTGTTGGTTTTGAGGGCTGTGATTTTTTTTGTAATTTAGGATTTTTCTTCTGTGTGTGTGCATGGTGAAGTTTTCTTTTATGATGTTATTCTCCTGCTGTGCTTGTGTTGTATGGAAAGTATACTGCAGATGAACTTCGAGACCCTACTGATGACATCATAGAAGGATGGTTGGCAGTGAAGCAGAGTTGCTGTGTGTGAAAGACAGATTAACAGATGAATATGTAATCCAGAAAACTACATTTGCATGTGCATATGCGTACACATGGTAAAACATACACACACACAAACTCAAGGCGTTCTTGTACTGGTTTTGTCCCTTTGCATAGAGCTCTGTGTGCTGAGCTGCTGTAAGGTGCAGAGTGCAACTTTGCAGCACCTTTTTTCAGGACACATTTACTCCCAGGAGGCCTCCAGCAGCCTAAAATAGTTTTGCTTTATAGCTCCAGAAGAAGCAGTCAAGTGCAGAATTAAGAATGCTTCCACACTGTGTGTCAGAGGGAAGGACTGGGCTGAAGTTTCTACTTTTGGAGGGAGTAATGCAGCCTGCAGATACCTCTCACTTTCTCACTCACCCTGAAGTCTAGCTGTTTCTAGGGGAGGAAAAGGTCCTGTGATATGAGTTGTCAGAACCAGATTTTCAGCATCTTCTACACATGGATGATGAAAATCTTCATCTGGTACTTACTCATGGCGTATGTGTGTGCCCACTGAAAGGAAGTAACTTTGATGAGAGAGAATATGCAGAACCGATGGCAATGAGCACAGCCTACAGCAGATAGTATTACTCCACAGGTAAAGTTCTGGCCAGAAATCTTTGGGACTGCTGCCACTGTGTTCATGGAGTAGGAACTTTGCCCTGCCTGTTAGGGCTGCCAAGGCATGCACCTCAGTAGTGTGAGGCTCCTGCAGCTTGCCTTGCTTTTAAAAAGAGCCAGCACAACAAATTTCCATTCTTTTAGGCTGAATCCTCCTAAAATAGCACCCCTCTTCTTGCTCAGAAGCAGTGCCCAGCTCAGCAGTACAGAAAATATGTTTCTGTAGGAAGCAGTGCAATAAAATGTGATTTCTTAATTTCCTGATCTTTTCTTCTCGTGATTTTACCAAAGTCTGTGGACACTTGTCCTACTCATGTACCATTTAATCTAGATAGCAGCTATTTTCCAAGAGCTGAGATTTATTGGCACAGAACCACAAAGAAATGCATCAAATGACAGGATGAAACTAGAAAACGTGCTTATCTGTTCCTTGTGCAGGATACTGCCTGTTCCTAGGATGGTTTAAGTGGTGCCGAGTGCAGGCACACTGTTAGTCTGTGTGACCTTTCCTTGCAAGATCCCCCTTGCCCTATTCTGCAGGCTCCATTATTTCCCCTGCTCTTGCTTCCCTCACTGTTCTTCTGAGCTTCTCCAAGGAATGCGTTACGGGCAAGGTCCTCACAGGAGGATCTCTGAGGATGAATTGGCATGCTCCTTGCCCACGTGCCAGTAAGAATTAGCTGGCAGTGTTTCAGGACCTTCAACAAACTCCAGTGGTAGCGGTAGGGTCTCCTGCAACAAAGAACTGCTTTGCAGAACGTATTGCAGAACATTTGAGCCTTCTCACGCCAGCAGCGAATTGAACACTAATGCTCCCAAATTCAATAAAACGGAATCTGCAGAATAATCCCATCCCTGTTTTTTGTGGGTGTTATGTTTGTGCTGTTTTTGAATGTCACTCATCTTTCAGCTCGGTTATGGCAGATCTCATCCAAAACATCCTCTACCCTGCTAGGAGGATGACAGGCACTTTCCTATAAATACATTCTTAGTTCTGTTGGCTAGCAGCAGGTTTGTTCCGAGTGCCCATGCCAGCAACCCCATAGCCAGTGAATACTTTGCCAAAACATAATCTTCCAAATGAAAGCACCGCGTGCTACTCTGCAGGATAATGTGCTGAAGTTTCACTTAGGAATGATTTACGGGATTAATTATAATGGAATGGTGAAATAATATTTAGACATCTTTCTTTTTTTGAAAGAGGAGCAAAAATGGGAGAAAAGAAAGCAAGGTAAGTGAAACTAGAAAGCCAAACTCACAAAGCCTCCTGCTCAACTTGCTGGAGGAGATATTGTCTTATCCCTCAGATCCAGTGAGGGTGTTGAATCCCTTGGGTACTCATAACTCTGTGAACTGCACACTGAATCCTTGTCCCTCCCCAATAGGAGGGACAAACAGAATGGCAATAGAAAGATAAACCGACAGTCAAGAAACTTGCAGGAGATGAGAGGGAGCGAGGCAAGGAAGGAACACAGGCAGTGATGCTTTGATCTCTGAGGACGTTGTACACATGGCCCTGGTGACTTTGGTGAAGTGAAATGCATGCATTCAGGATCAAGGCCTCCACAGAAATTTGCATGGTGCTGTGTTTATTACCTAGTAAACGATTAATGCTGTAGTGGAGAATTCAATAAACAGAGGTTATTTGCCACTTTAATGAGTTACATACACGGGTTGGAAAACAAACATTCCTAGCACGTTAGTCCAGGTAACACTCTGGGCAGGGAGACTTTGGTTGTGCTGCATCTGCCGTTCGGTGGCAGCTGCCAGTCACTGCATGAAGGCTTCCCTCACTCTAAGCAGACAGCTGCAGAGCTTTCTGCTCTTTTTGGGTTGAAATAAGTGGCACAACAGCCTTTATTCAGATCTCATGTTTGATTTGTGCCCAAGTATTTCCATTCACATGACACACTCATTGCACACAATTTTGTTGTTTGGCAAAAAGAGCACTCTCCCTTTTTTAGCTACTGTGCAATTGTTTTTGCCTTTGCAGAAGGCTCTGCTTTGGGTTGGAGGACCAGATATTTTTTTCAGAGGAAGCATGTATGTTGTTACCATGTGCAGGAATCTGCTGCAGGCAAAGGGTTTCTCCTCTGTGGCCGCCTGGAGAAGTGCAGACACTGGCTGATGTAGCTGGGCTGGTCCTGTGGCACGGGAGGAGAAGGTTAAAGTCACGTTTGCTGAAGTGGGCAGGAAGGTGGAGTTAGCGATGGCTGCTCTTGCATTAAACCTTGCAAGGCACCTGGAGATGGGGCTGCATCCCTGCACATCCCCTGCTTTTGAGCCTTCTTTATTTCCCAAGGAAGCTGTCTCCATCTACATGTGACCAGTGCGCAACACTTGAAAGAGCAGAAGTTGTTGTTTGAAAAACCAGTTTCTAGAAGTGAAGATTGTATTTTGTTGCCCATTAGTTATTAATTGTAGCAGATTAGTGTGAGTTAGAGATCGAGCAGTTAGAGATTTACTTTGCATGACTGTAGTTGCTCATCTGGGACTCAAGGGATCAGCCCTTCTGGAAGTATTTCCATTGTGTATTAAGTTGGATGTGTAATAGGATCCACGATGCCTTTTCTTCCTCTCTACCTTCTGCTTCCAGTCTCATTAGAAACTATGAGGTGGAAAATAGTTTGGAGTTCACCAGAATATGTTTTATCCCAGCTCTTCTTAAATTTGATGGCTAACTGGCACTGTCTATCTTTGTTTCCTTTGTTTCTTGGGGAGACTTCCAAGTTGCACTGAAACGGGAGAGAAGAGGGCTCACTCAGCCTCTGCCCTGCTATCCAGATGTTCTTTCAACTCTCAAAATACAGCAGAAAGATAGCTTGTGTCTATTACTGTACATCACCCATTCAAAAGTACAACTCAGAGCTGTCATGAGTTGGGGATTATGCTTCCCTGAGCACTAACATTGTGTCACTTATGGAGGTCATTAACTTGGTTTCTCCTGCACTTTTCCCCCGCAG
Seq C2 exon
TTCATTCCTATGCCTGTGCTCTATGGTGTCTTCCTGTACATGGGTGTTGCATCCCTCAATGGCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604:ENSGALT00000018945:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.6=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]