GgaINT0079543 @ galGal3
Intron Retention
Gene
ENSGALG00000020084 | CAPN13
Description
NA
Coordinates
chr3:7791804-7792078:+
Coord C1 exon
chr3:7791804-7791820
Coord A exon
chr3:7791821-7792015
Coord C2 exon
chr3:7792016-7792078
Length
195 bp
Sequences
Splice sites
5' ss Seq
GTGCTAAGT
5' ss Score
2.08
3' ss Seq
GCATTTCTTCTCTGATCCAGGAT
3' ss Score
8.61
Exon sequences
Seq C1 exon
GCCCCCTCCCAGCTGTG
Seq A exon
CTAAGTGATAACATCCGAACTGTGCTTCTTCCTTCATTGCAGGAGCTTTCTTACTCCTAGTCCACTTTACTTGAGGGATGTTAAAACTGAGCTTCTACTGTCGATTCTCTCTAAAGCATTGTTTGATCTTCAGACTGCTGCTTCCAATTGTTTTGTAACTGAATTATTTATGTGCGCATTTCTTCTCTGATCCAG
Seq C2 exon
GATGTGCCAAGACAGATACAGGACAGCTCCTATAAGGCCATCTTCCTAAAATATGCGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020084:ENSGALT00000014759:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]