GgaINT0079547 @ galGal3
Intron Retention
Gene
ENSGALG00000020084 | CAPN13
Description
NA
Coordinates
chr3:7795402-7796348:+
Coord C1 exon
chr3:7795402-7795463
Coord A exon
chr3:7795464-7796262
Coord C2 exon
chr3:7796263-7796348
Length
799 bp
Sequences
Splice sites
5' ss Seq
CAAGTACAT
5' ss Score
1.99
3' ss Seq
GAAATCTGCCTTTCTGCTGGTTT
3' ss Score
-2.62
Exon sequences
Seq C1 exon
CTCAATTCAAATGGACAACTCACACTGCAGGAGTTTGGGAGCCTCTGGCGAAGTGTCACCAA
Seq A exon
GTACATGGTATATGGGGTTGCTCTCTCTTCTCTGCCACCATCAGACTCCTGTTGTGTTTTTTTTTTCACCACCAAGGTGCAGGCACTGTGATATCAAAGTAGCATGGGGGGAAATGTTGCCAAGATTGCATCTTTAGTAGGTCAGATTTCCATCCTCTCTTTTTAAAGCTTTCTTTCTTGTTTTAAAAGTCTCTGCTCTGAGAAAAGCATTAGATTTGGAAACAATATGGATGCCAGCTTGGTATTTAGGGCCTCACCTAAGTTTAGGCTGCTTCCCTGAGTCAGGTCCTTCTTCCTCCAGTCTTAATGCAGAAGGGGAAGATTCCTTGAAGCCTCCGAGGTGGGTGGGCTGTGCTTTGTTTTGACCCTCTCAAGACAGTCTGTGGCCAGCTAGGACAATGGGGTGCCAGTTCCCTGCTGAGTAGCAATGCCCTTCCCACTGACAGCACCTCAGCTTTGTTGGGAAAGATGACATTCTTGGATACAGGGACTCCTGGCAGATTTAATGTATTACAGACAATGTGTTTTTGTCAGTGGAAGTACGAGTATTCCTATTGTTGCCTGTGCACACAAACCAGGAAAGTGAGCAAAAGGGCTTCAACCCCAAAGTGGAATTTTGTTATGTTACAATATATTGACTGAGCCTTCTGGAAATGGTCTGTCTTGTCGTGGTCACCCTGTCTTATCTGTTGGCTTCCTTGCAGTGAGTTTATTAAGGAAGGAAAGCATCCTACCTAATTAGATGTAGCAGTACGTTTGGAGAGCGGTGATGAAGGCCTGAAATCTGCCTTTCTGCTGG
Seq C2 exon
TTTTCAGGATCTCTTCAGGAGGGAAGACAGAAATTGTTCTGGATTTCTTGATGTATACGAGCTGAAGAGTGCGATACAGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020084:ENSGALT00000014759:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(62.1=85.7),PF134991=EF-hand_7=PU(0.1=0.0)
A:
NA
C2:
PF134991=EF-hand_7=PU(47.5=96.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]