GgaINT0081361 @ galGal4
Intron Retention
Gene
ENSGALG00000009382 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr3:17068349-17069087:+
Coord C1 exon
chr3:17068349-17068406
Coord A exon
chr3:17068407-17069022
Coord C2 exon
chr3:17069023-17069087
Length
616 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TTTTCTTCTCTTTTGTCTAGGAA
3' ss Score
11.06
Exon sequences
Seq C1 exon
GACTGTGAAGTGACTGCAACTGAACTTCAAACTATTCTAAATAGGGTTTTGGTGAAGA
Seq A exon
GTAAGTACTATTATTTGATTCACACTGAATGCAGCTCAGAGGTAAGGGCTGAAATGATGAGGCATAAAGTTGCCCTTTTGTCCAGACTGACACCTACACATTAATCTCTCAGCATACAAGTAGGATCTGTACTGACAAAACCCAGTTCTGTCAGCTAAGGGTGATGGAAAAATGAAGTTTTGTCCCAGCTGAATTTCTCTTGGCTTGTTGAACCTTTGCTACAAAGGGCAAAACATTACCTGGTGCTCCACTTCCAAGAGCTGCTTGCCACTGTCCTGCAGAGGCACCATGTTCCTTCTGCCCTCTCAGAAGGACAGCCTGGTCACAGGAGCTCTTCATCTGCTTTCGCTGTAGGAAAATATTTTTATTTTGCTGTATACCTTCGGTAGACAGATAGAGGCTCATCACTCCCAAAATCCAGAGCATTTCCTTTTCCATTTAAGCTCCTGCCTTAAAAAAACCACGTTAACTAGCTGGAAGGAAATGGTGAAAGATATGGCAGAGCATTTGCTTTGCTAGCAAGATTTTAAGGCAAATAGCAACTCCAGCATGGTCTGCAGAAATTATTTATTTATAAGAAATATTTCTGACTGACTTTTTCTTCTCTTTTGTCTAG
Seq C2 exon
GAAAGGATATAAGAAGTGATGGATTCAACATTAACACTTGCAGGGAGATGATCAGCCTTTTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382:ENSGALT00000015288:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]