GgaINT0081601 @ galGal4
Intron Retention
Gene
ENSGALG00000009925 | MTA3
Description
metastasis associated 1 family, member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
Coordinates
chr3:23378223-23380870:+
Coord C1 exon
chr3:23378223-23378373
Coord A exon
chr3:23378374-23380849
Coord C2 exon
chr3:23380850-23380870
Length
2476 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAAG
5' ss Score
-5.29
3' ss Seq
CAATCTTTTATAATTAGCAGAAT
3' ss Score
2.96
Exon sequences
Seq C1 exon
AGATTCACCCTGCCATGAAACCCAATGTAATCAGATCAACACCAAGCCTTCAAAGTCCAAGTACGAAACGACTGCTTGCGCCCTCCAACCACTCTTCACTTAGTATTTTGGGAAAAAGGAACTACAGCCATCATAATGGTCTTGATGGTAA
Seq A exon
GTGAAGGAATATAAAAGATACATTCTATTAAATTTCTGAATTGCACAAATTTCTGTGGATCTGAAACAGCAAAATTTTATGACTTTTCTGTAGTGTGTATGTTTCTAAAAAATGATGTTAAATAAGAAGGCACAGTCATAGAAATTTAAGGTGTAGACAGCATATTTTCAGCGCTGACTCTTAATGCAATTAGTGGTGATGCATATTCACTGAACATGAGTATTCATTAATACCATTAATGCCGTGTCTTAGAAAACCTATTTGTACCATCTTTCTTATTAATCTTTCACCTCTACATAAAAGCATAAGAAAGGAATAAAGCGAATTTAGTGAAAGGAAAAAGATGCTGTAAATGCTTTGCCTTATTGTGTTTTTATTTGAAGAAATATTTTGCAGAGATATGCATTGCATTTCTTGAATTCTTGTGAGATGTAACTTCTGTAAGCAATTAGACTATTTGCTGTGTGGTGTTGCAAGTGGAAAATCTGATAGAAGTTAGGCTCTGAAATAGGCTGTTGAGACATGATTAGCACAAAAGAGGTGACTTTCTGTTTTCATGTTTCACAGGTCAAGGTAGAAGTGAGAAAGATTGAAAGATTCTTTTTAGACAAGATAATAGAAATGCTATTCCAAATACAGGAGGGAAAGCTCAATCCATTTTTTTACCAGAACAATCATGCTTTTCTGTCACTGTGAATGTCATTTGTATCTTGCAGTGAAAACACCTACTGTACATTTAACAATACCTAGAAATCACTACATTTTTTGACAAAAAGTGGTTATTTACTATATATGTATGACAGGATCACTTGGACTTCTGCTCACTGTGCAAACAACCATCACATGGTAGGCAAATAACATGCATGGTAACACAAGCTATTCAGTGGACTAAGATGACAACTGTGTGATAAAACAATGATACCATTAATAAGCATAGCTATAAATGCAGTACATTTCACACAGTAGAATTTTCACTGTGGACATTCATTGTGAAGTACTGTAGTGCTGATCTGGTAGTTTCTGCATGTGATTATGAACAAAAGCTGCTTTTTTTCCTCTCCTCTAATGCTGGCCATTAGACTGGACTGTCTTTGTAATCTTTGAGCGAAGAATGAATTTCACCAGGGAATAAAGATGTTGCTACATTTCACAGCAGAGAAAGCTATAGCAATAAATTCAAGGTGAACATTATGATGATATCCCTTTAAAGATATGAGCTTCATAACATTTTTCTATTTATTTTGAATGTTCTCTTCAACGTAAAGTATTTATCAAACTTGTTATTTGCCATATTGATTAGTTTTTGATTAAGCAAGCAGAGAATCTGAAGTCTTTCCTGCTCAAAATTTTCTTGAAACAGAAAAAAAATTAAACGTGTTTCCTTGGAATTTATTTCATATAACCTTGTGTGAAGTTATGTTAGGAAGAAGGTATTTTTCACTGTTGGATTGAATTTCTCAGCAGAGAGAGATGTCTTTTCACTATGGCGTCTGCTTTTTTTTGTTATCACAGTACTATTTTTGGTAAAGATGGAGAAGTCCTACCGAGGTTGCAGGTTACAACCATGGAATGCATATTGAAAAGCATCAGATACTCCATTCATTTTTAAAATAAAACCTTTTTTTTTTTCTTGCATATATTTCACATTAATAAACTATATGCCTACCTAAATTGTTTTAAACTTCATTTTATATACCAGTCATTTCTAACTGAAAGAGAAGAAATGAGATGCGGTAAGCTATTGTGTGAATCTACTGTAACCATTTCTCACGTGCTGAAACAAAACATGCAGTTAATATTGAATTGTGTACCCGTTTTTCTGAAAAGTGAGAAACAAATGCTATTTATTGTTTTACAACCAGATTTCTTTTTCTCTGAAATTTACTGTGGAAATGTGTGGTCTAGTTTTGATCCTTGCTATAACTAGTAAAAGTTCTGAAATACTTGGCTACATATCATACTTCAGTAAAAAACTGATGTGCACTGAAACTGATGGAGATGTGAGCACAGGAAGTAGATCTCTCTGGTGATATGTGTATTTCTGTAATGTTACTGCCATTTGTTGGGCAAGCAGAGCACTATGAAAGAGTCATTTACAACTCTGTTATTTCCCAACTTATAAGTGACTCAGAGCTTTTATTTATACGAAGATATGAAATGCTTTATTTGTACGTCTTCTTTACTTACATTCGATTCTTTAAAATAGATTGACTTTAAAATAGATTACATTCGTGCCTTGATGCCTCACTTTGAGCATTCTGTACATTGCTTCCATCTTGTTGTACTAAGGAAAACCTGAAACTGGCAGTTGAATAGAATGGGCAAGCTAAGTGGGATCACAGCGGGAGCTGAGGGTATTCCATGGTAAATTGCCCCCTGAGCTGCCCCCAGTTTCTGCTGCTGAATAAGGATTTATTATACATGTAGGTAATGTGTAGGCATTATTTTACAGTATGCAATCTTTTATAATTAGCAG
Seq C2 exon
AATAAAACAGCTCTTAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009925:ENSGALT00000016137:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]