MmuINT1023503 @ mm10
Intron Retention
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:83804451-83814905:+
Coord C1 exon
chr17:83804451-83804597
Coord A exon
chr17:83804598-83814635
Coord C2 exon
chr17:83814636-83814905
Length
10038 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
CTTCTAAAAATTGTTTTTAGGGC
3' ss Score
7.41
Exon sequences
Seq C1 exon
AGATCCATCCCGCAAAGAAACCTAATGTAATTCGGTCTCCACCAAGCCTGCAAACTCCAGCTACCAAGAGGATGCTCGCCGCTCCGAATCACACATCTCTGAGCATTCTGGGGAAAAGAAACTACAGCCATCACAATGGTCTAGATG
Seq A exon
GTACGTAACCCTGAGGAGCCTCCTTCTCTGACGGGCTGGGACCACTCTGTCCTCTCCTGCTTATTATGGCTATTCTTAGCTCCTATGGTGGCTCATGCCGTAACCCTGGCACTGTAGAGGCGGAGGCAGGAGGACCAGGAGTTTAAGGCCGATTCTGGCCACCAAATGAGTTTGAAGATAACCTGGGCTACATGAGCTCATGTTCCAAAAAAGCCCAGAGGTTGGTGGGAATGTGAGCCGGTAAGGGCATGAAGGGTAAGGCTGCTGTGGGCCAGTGAGACCTTGCTCAGCACCAGCTCCCCACTGCCACATGCGGCAAGAGCCTAGTTCGGAGGGGAATCTGTATTTAGCCAGTGTTCCTGCTGCTGTTTGGGCTCACTTCTCAATTTAACTTTCCTTGCCTAAGAAGGATTACGTTGCCTCGTGTCGAACCCTCAGTGATCTCCAGGGCTTTCTCTGCATTCTGTGGATCACGTTGGATTTGGCATCTGTCCCTAACTTCTTTCATCATATCCATGTTTTTAATTGCCCGAGAGGGCTACATATCATGAAAGGAATTGCCTGGGTGATATCCTAAATACAGAAGTAATTTGTTTGAAATGGAAAACCTGAGAAATATCGCCTCTTACCCAGAGCGCATCTCTTCGGCTCAGCCATATAATGACTCTTCAGGCGGAATTGAATTATCTCACCATTTGGACCCCAAACGCCACAGTAATAAATCACGCAGGCGGTAGATATTGTTCATTTCGGATGTCCTAGAGTTTGAAGCTGTCTTTACTGTTTAAGTCTTGGCATGTATTTATGAATAAAACTCTCTCCAGGATTTTCCTGCCTTAGGAGCTCTGCCTTTTTCAGAGACAGTAAATTACATATAACAAGGCCCTAGAGCACGGATATAGAATAGGCCTCCTATAATAATTCCCATGGCTGACGTCCCTTTCTGTGGCGTTCGATGGCCATCATCATGCCAAGATGGGTAAAATACTGCGGGTGAAGAGCTTAGCGGGTGAAGAGCTTAGTTTGTATTTGTAAGATATCACGTGCTATAAATGTGCCTCTCAAGGGTTTGGCTGCATCGCAGGTTTACACAAACACTGTCAGGGCAGTAAGAACTTTGGCTCCCTGTCCCTCGTGTGCCTGACAAGGAGGCAGTAGAAGACCAAGCAAAGAGGAGGTCAGAGGGAGAAATGGGATTTCGTTTCAGCTTCTCCTCACCCACAGAGGGGCCTTGGGCTCAGACTTAAAGGAGTATTGGCTCCTTTCTTTCCACCTAGGCATGTCCTCTGCTTCCCTGAGTCCTGCTGCAGAGCAGAAAGTAGGTTGTGCTCTCTCCTCTCCCTCCTCCTCCTCGTCTTTCTCTTCCTCCTCCTCCTCCTCCTCCTTTCTGAGATAGGCTGGTCTTAAACTTACTATGGAGTTAAAGACTAATCTTGAGAGTCTGTTCTTCGGCCCCTCCCTCCCAGGGGCTGGGTACAGGTGTGTGCCATCATGCCCATTTTAGGTAGTGTGGGGGGGATCGAACCCAGGGTTCTATATCTGCTAGCTACATGCGTCTGTCACCTCCCTCACTGCTGTGTCAGAAATACCTACCAAGAAGCAACTTAAGGGCTGGTGAGATGGCCCAGTCAGTACAGTACCTACCACACATGTGTAAGAGCCTGGGTTGGATCCCAGCTCCCACCTAAAAGCCAGGTGTCGTGTGTCTGCAGCTTTAGCAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGACAGATCCCTAAAGCTCTCACACACCTGCACATACATGTACCTACTTGAACATATACATCCACATATTCATACCCACAAAAAAAAACAACTTTTAAAGAAAGGAACTTAAAGAAGGGAGGTTTTATTTTGTTCACAGAGCCAGGGAATATAGTCCAGCGAGATGAGGAAGGCACGGGGCAGGCCTGAGTGGCATCTGGTCACATTGCATCTGCGAAATGCAGTCAACAGGAAATGGGGCCAGAGTGTAAGACCCCAGTGGTCTGCTTCCTCCGCCTACTAAACCTTCTGCAGCTCCCCAGACAGGGCCACTGTGTGTGGACCAAGTGGTGGAATGCAGAACTTATGGGGACATTGCACATTCAAGCCACAGCACCAGACAAGCAGTCCACCAGTGTGCCACACCCCCAGCCCTTCACCAGTCTCTGCAGTAACCAGTGCTGGAAGTCTCCCTCGCACCTCACACGGCCGCTCTGCAGCCAGGTCCAGACCTGTACGGCAGCTCCGGTCAGGTCATCTCTTCAGCACCTGGTGCCCAGCATCATGGCCCTCTTCTCCTTGGGGCTTCGCCTCCAGAGCAGCTTGCCCTGCTTCTCACTGAATGAATGCAGGCTGTTGCAAGGTCACTGCCTCTGCACTCTGAAGAGGACGCAGGGGCACAGCACGCATGAGTTCCTGACGCCATACTGACCAAGTCAGCAGCTCGCCGCGGGTGACACCTGCCTCGTTTCCCAAAGATACCCAGTCTTTTCTTCAAAACTCTTTGATCCGCTGTCGCAGCTCAAAAAGGAGGCTGGTGACAACATGCCTTGCCGTGTGCTAGCCAACTAACCTGTGCCTTCCCATTCGGTTCACGCAAAAAGATCTCTGGTTGGGATGGGTTTGTTAGGGCACACAATTGTATCTCTGTGCCCAGAGCCTGGCACTTAGGTGCACAATATAAATTATACAAAGGAAAGTGTTGAAGAAAACAGACCTAGTGCAGTGGATTGTAATTCCCCAGTTTACCAAATATGGGCACAGATGGACTCTAAGTCAAGGACAACGAGTTTCAGAATCACTCTCTAGTAACTGCTCCAGCAAGCAGAGAGTGTGGTGGTCCACACACGAGCCCTAGCACTCAGGAGGAAGTGGTGGGAGGAGTCTTTAGACCTGCCCAGGTTACGTACCCAGACTCTTATCTTAAAGCAGAAGGGGCTGGCGAGACCGCTCAGGAGTTAGAATCATACTCTCTCTGCAGAAGACACAGCACACGTGCCTGGTGGCTCACAGGGGCCTTTAACTCCCACTTCCTCTTCCACCTTCACTGCAGTCGTGTGCACATAGCCCCTCACACATAATTAAAAATAAGATAAAAACTTTTAAACATGCTTCTCTTTATTTTTGGTTGTGAGCCCAGCGGAGCCATCTTTCCAGCCCGAAAATATTTTTTAAAAGCAATGTGAGTACTATTTAGAAATAGGAACTATAATGGCTCCTCGGCCTTTGGGCTAAGATCAAGTGTAGAAATAGAAGCTATATTAACTGTTTTAACAGCTAAGTTATTATAAGACATCAATAGAACAACAGCTGGACGGTAGAGCAGACCAACTAACACGGCGAATGTCCTTGAGTTCAAAGGGCACAGAAACTGGAAGTATCTCAATTTAGAAGCTTTCAGAGGATATACCAGGCGGTGATGGTCCAGAACTCGGGAGGCAGAGGCAGGCAGATCTCTTGAGTTCGAGGCCAGCCTGGTCTACCAAGCTAGTTCCAGGACAGCTAGAGCTACACTGAATGGCTAGGACTGGAACAAGCTGCTTGTGCTAACAGGGTGTGGCTGACTGGAACAGAAGGATACTTGTAGCTCTCTAGCGCCCCCTTCTGGGAGAAGAGGGAGCCGTGGCAAAGGATTTTTTTTTTTTTAAGAGACTTGGTCTCAAGTGTCAGGAAGCCATCAGAGGGATAAATTTGGTGCCTTGAGGCCATACTGCTACAGAAACAGATTCCTAGTGGGCCCTTTCCTTGGAACAGTGACCGTGTTTCTTATTCTCTCAGGATCCAGGTCCTGACTAACCTCAGTGCTGGATAATATCTGGTTAGTGTAGTAAGTTTCCATCTCCTAGTTCTATTATCAAATACCAAAGCAGGTACAGATTCACGGGGAAAAGCCTTACCCCGTGTGATACAATGTTGAAACCAATTAGCACAGGTACTTAATTACCACAGCCAACAGATGGACAAGACTGTGAAGATAGGGGAAACTAATTTGGCTGCAGACAACCTGCTTCCAGTGAGTGTCCCGCCTCCCAGCTTCCTGTCTCTTCTCTGTCACTCATCTCCCCTCCTGTCCTTGCCTCTCAGGTGCTTTTTTTACTTTTAGGCAGGAAATCGCTGTGTAGCTTACGATCCCACGGAGTTCCAAGTGTATGTCCCTTGGTTCTGTATTTCTGGGCCCGAGGTGAGGTTGGAACATCATAGCAGCAGAAACATAAGCCAGCATTGTTGACCACAGCGGCAGGCAGCAAGCACAGGTGGACTTCCGGTTCCCGGTGGTGGGAGCTCTTGATATTTGCAAGAAGGAATTTTTTTTCAGACATTTAAAAAAAATGGTTTTTCGTTCTTTTGAGACAAGATGCCATGTATCCTAGCTTCCCTCAAACGCCAGATGTAGCAAAGGTGCCAGCATGCCTAGTGTCTACAGTACTGGGGTCTAACCTAGGGCCTTGTGCACCAACACACATTTATTTTGGGGGAAGCAGTCTACAGCTGAGCTCCATTCTAGATCACCTTGTCACACACACACACACACACACACCCTCCCCTACCCCCAAATAGACAGACAATTTCATACTGCTTTCCTGAAAGTTTCTGTCTTTTACTTGGCCCTGGTACAGACTAGGGTCAGAGAACAAGCACTGAGTGTGGGTTAAGCCAGTCCTAAGGCGTCGGACCACATACAGCACCCACCCAACGGAACTGACTCCACCCAACGGAACTGACTCCACCCAACAGAACTGACTCTGCCAGTGCAGACGGGCTCATGTGTCAGAAGCCTCGGTGCAGGGAGCTGGAAAGGCAGGGTTGATCTGACAGTCATACCGCGCAGATATGTTCAGTGTGGTACGTCCTAGTGTCGGGCCCTGTGCTGTCACCCACCCATTTGCCGACATACTTAGAGGTGCTTTGATGTCATTTGCATTGCTGGCAGACAGAGAACCTGCTACAGGGGTTCCACTACGTTAATGCCCAGTTATCAGGGATAGGCCCTTTAAGGGAAGCTCTCTGTGCCTCTGAGAGCGCAAGAAAGGGCGGCGGGGCAGGGGAATAGAGGCATTTGTACCATGGGCAGTGGAGACAGGTAGCCAAGTGTTTGCAGGAGCTGCAATGAATCTCGGACTTCTCCCTCCTGCTCCCGTGAGGCCTTTGGCTTCTTCACACCTGTTTTCTCCTCTTTCAATCTGTAAAGTGGTGATGGCATCCGCCTTACAGAGCTGCTCTCACGATGACATCATTTATACTTTTATATCATTTCATCATTTCATTTCAGTAGTGGAGAAAAAAAAAATCAACAGCCCAGAGAGGTTTAGTGACTCACCCAAAGTCACATCGTTAATGGGTAACTGCGGTGGGATTTGAACTCCCAATCTTGTGTCGTCCTCTAGGTGAACAAGGACCCTGGGCTGTGCTGAGTGAGGCATGCTCTTGGGTGATGTTCATGTTTCCTGGGTATAAGAGTCGAGTGTCTGTTTGCAAATACATAGGAAAATGCAGTGGGTATTCGGGAATCTTTTGGTTTCATTTCATTTTGTTTGTTTCTTACTCAGACTGAAGGTCTAACAGAAACCTGTGGGCTCCATTCTCTGGCTCCCAAAGCCTCTCCTTCCGTGTCTCACCCCTGTAGTGTTTCCTTTCCGGCTTTCAGGAGAGTGGAAAAAAAGAGAAGAGAAAATGCAAAGAGTCACTTGAAGGTAGAAGGTGTTTAAATGAAGTCTGCTGCCTCTGACTCATAGTGGGTGCTCAGTAAGTGTTAAGGTTCTATCTGCAGTGTGGACCTATAGCTCAGTTGGAAAAAGGGCCAGTCCTGCCAGCACAAGGGCCTGCATCTCATCTACAGAACTCACTTTTGAAAGCAGGGGTGTGGCGGAGAGACCTGGGCGTGGTAGTGAACGCCTTTGATCCCAGCACATAGGAGGCAAGCCGAACTCTGAATTCACGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACATAGAGAAATTGTCTCTGAAAATCAGAACTGGGGTGTGAGGGGCACTCTGGATAAATGGCTCAGCAGATAAGAGCACTGGCCGTTTTTCCAGATTTGATTCTCAGAACCTTCATGGCAGCCCACAACCATCTACAACTCTACTCCCAGGGGATCTAATGACCTCTTCTGGCCTCCGAGGACACCAAGCACCCATGTGCCACACAGACAGACATGTAGACAAAGCACCCATAAGCATAAGTAAATATAGTTTTAAGAAGACACCTGTTCATAATCCTGCTCAAGGAAGATCAATCCCTGGGACTTTCCAGCCATTCAGCCTGGCCGTCTTGGTGAATTCCAGGCCACCATCTCAAACAAACAAACAAACAAACAAACACAAAACAGAACACACAAAACCAAACAAAATAGGCAACACCTAAGGAGCATAGCCAAGGTTGACTTCCGGTCTCTGTGTGTACACACACACACAGAGTAGCTCTCCAGTGAGTAAGGTGGTACACACCTGTTATCCCAGCATTTAGGAGCCATCCTCTCCATAGTAGCAAGTTTGAAGACAGCCTGGGCTATATAAGAGCCTATCACACACACACACAAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAAGGAAAGGAAAGGAAAGGAAAAGAAAAAGAGAGGAAGAAAGGAAGGACGATGGAGGAGGAGGACTTGGAAAATAGCTATTAAAGTTTTATTTGGAAGAGGAAAGCTAGGATATCAACCAGTTTTATAGTTATGTGAATTATATATTATATATAAATTAAATGTCAGCTTGTTCCTTATGACTTATTTTTTATTCATAAACTATTTCATCCATGCGTTTAATGAATTTGGGTCATTCTTACCACCACGCCCTCCCCTCCCTCTCACACTGAACCCCTCCCCCTCACACTGAACCCCTTCCCACTAAATTCCCACCCCTTCCTGCAGAATCCCCGCCCCTTCCCACTGAATCCCCTCCCCCTCCCATGGAATCCCTCCCCTTCCACTGGGCCCCTCCCACTGAATCCTCTGTCCAACTTTTTTGTCTTTTGTATTTTTGTGACCCAGTAAGTTTAATTAGCAATGCCTACAAGAACATGAATGGGAGTTTGTTTAACGGGACATGGCCCCATCTTATGCAGGTAACCAAAGCTACTTTGAGTTCGAGAGTGTGGTGTCCATGTCATATGTATATATATGGATTGAACTTGGGCACTGTACATACTACACAAGTGCCCAGTTACCTTTATTTCTTACCTCAGAGTGTGATTCTCCTAACGTGACTCCGGGACTCAATGCTCTTTACTTACAGGCCCAGCTACTGAGGAAGCTGAGGTAGGTAGATAGTGTTATATCCCCCATGTATATTTTGCACATTAAGGGGTGTGATATCTTTACAAAGAAATTGCCTTCGATTACTTAATTCCAAGGAGCAGTAAAGACAGGAATTCCATTTCTAGAGTGGGCTTGCTTGCTTGCAGGCTTGTATAATTAGAAGCCGACAGCAGCAGGATGGGACATCAAGATCTTCAGACAGCAGAGTATTTCTCACAGTGAAGACTAAATTTGAAAAATAAAAAATCCAGCAAGGAGAGAGCAGATGGGCTGAGTACGCCTCCCCTGACCTCCTCAGCAGATGGACTCCTCCCGCCCGCTTCAGCTGATGGAGTCTTGGCTGGCCCGATGCGCTGACCTTTCATTACGCTGGCACGATTGCGTGCTATGACTCCACCACCATCACACGGGAACCTGGCGGAAAAGCCTGCTGTGGACTGATACTGCCCACTGGGCACAGCTGGAGGTGCCCTAAACCTTCACAATGGCATGGCTACTGTTTAAGGGGTAGTGTGGATAAGATTCGGTGTGTGAAGAAAACCAAAGCAACAGGCCCCGGAAGAGAAGTGGGGTAGAGCCAGGGCAGCTGGGCAGGAAAAGTGATGGATTGTGTAATAGCCCTGTTCTAATTCTCTCTTCTGGCTTATTTCCCCTGGGGCATGCTGGCATGTTGTAGACTGTTCTTTATCTACCGAATTGAGTGATGTCGTTTCCCTAGCTCACCCATGGAGAGGGTCATCTACTGCCAATGGCTCTCCAAGTACAATATTATGATCTGGGTTGCGAAGAGTGTCCTTTCAGTGATTTGTCTCTGGCATCCATGATCCAACAAGTCCAACTGTTGGCATCTCAGCACTGGGAACCGGTTGGTGGCAAGGGCCACCGTACCAGTGTTGGAGCTCTGGGGCTGCATCTGCTGTTTTTTCACAAATGCCAATAAAAATAGACTGCCAGGGACAGTGGATGGCACACCCAGGCATGCTTGGGTCCCACTGCCTTCTGTCAGCAATTTAACATCATTTCCAAAGACCACAGTTTTCCTTTCGAATGTTCTAAAACATTATTTATGGAAGAAAGTCACGTTCTTTAGATTCACCTCTGGTCTCCTAGTCTCAAGTGTAGTGTGCCATAACTTGGCTAAATATATCTTCTAAACTGTGTAGTTAAGAACCATTATTTTGGGCTATATCTGGGGATATAGCTCAGTTGGGAGGGCCTACAGACTCTGGAGATAAACCCTATCACTGCGCAGCCCAGCTGTGGTGGCACACATCCATTACCCCAGCACTTGGGGAGTAGAGGCAAGAAGATCAGTAGTTCATCATTGACGGCACAGCAATTTAGACTTCAGGGCTACTAGAACTTCTGTTAGTCTGGCACAGTGGTAGAGCACTTGCCTGCTCTGCACACGGCCCCTGGTCCAGCTCCATCCAGCAGGGCAGTATAAAGGGCCAGGTGGGCTGTTAAATACGAAGCAGTGCGGAGGAGTGCCTGGTGTATCAAGAGGGCTTGAAGGCTGCTCCTTCACTGTCTGAGGACCATAGATGTTTCCTTGGCCTAAGAAGCCACAGGGGTAAGGGTTGTTAGGAAGATAGACCCAAGTGCATTAGGCATGATTAACCAGCAACCTGGTATTTTTTTTTTTCGAGATAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGTTTCGAACTCAGATCCACCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAAGTGTGCACCACCATGCCTGACTTATTTTTATATCTTTATGTGTATGAGTTTTTTGCTTGCATGTGTGTAGGTGCACTATGTGTGCACCTTGTGCTCGTGCTCAGGGAAGCCAGAAGAGGGTGACAGATTCCCTTAGGACTAGAGGTAGAGATGGTTGAGTCACTGTATAGGTACAGGGAAGTGAACAGGAAAAGTATTTGTGAGCTCTCTCAGCCTCTCAGTTTTGAATCCAGATGCCTCAGTAAATAAAGACCCACCTCAGAAACCAATGTGTAAAGACTCTTCCTCAGAGAGCTCCCAGGCTCTAGCAAGGAAATGGGGAAAAAACTTTCTGCCTTAGTTTCTTTTTCTGTTACTTCATTAAAATACCTGACAGCCCCCACCCCCCAAAGAAAAACCATGAGGGAGAACAATTTTATTTGACTCATAGTTTGAGGGTACAGTCCACCATGGTAAGGAGATCAAAGTGACTGCTCAGCCCACTTTCTCCAATTATAGCGTCCAGGACCTTGGCCAGGGGATGGTGCCGCCCACAGTGGGTGGGGCTTCTTACCTCAGTTAACACAATCCTACAACCCTTGACAGGTGCATGTCCAAGGTCCTCCTCTTTCTGGAAAACTGTCTGCACTTAACTTTCCAATCAGATTTGTCTTGTCTTTCCATTAGTGTGTCCCTTTGTATTCCATGTATTTTTCAATTCGGTTGCTGCATGTGTTTGTAAGTGCATATATGATTTTTATGTCTTTTTTTTTAACCATTGTGAAGTGACCCTCGTTATCAGTGTTAATACTTGTTATCTAGTAGTTTGTGTTTTCTAATATCAGTATGACCACACCACTTTTCTTTCTTTTTTCATCTCTCTTCTAAAAATTGTTTTTAG
Seq C2 exon
GGCCAGAACGATGGCTAAGCAGGTAAAGGCGCTGCCACCAAGCCGGTGACCTGAGTTTGATCCCTGGGACCCTCATGGTGAAAGGAGAGAACCGACTCCTTCAAGTGCCCTCTGACCTCCACACGTGCACTGTGGTACGCACATGCCTACACACACACACACACACACACACACACACACACACACACACACACAGATTAATAAAATGTAATGAAATTTTATAAAAATATAAAAAATATTTAAAAATAATAAAATGTAATGAAAATTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817:ENSMUST00000067826:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (disopred):
C1=0.892 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types