GgaINT0087340 @ galGal4
Intron Retention
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28778775-28780494:-
Coord C1 exon
chr3:28780372-28780494
Coord A exon
chr3:28778906-28780371
Coord C2 exon
chr3:28778775-28778905
Length
1466 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
TATTCTTTCTTCCTATATAGATT
3' ss Score
9.98
Exon sequences
Seq C1 exon
GTTCCAAGCTTTGAGTTTCTTTGTGAAAAATTGCAAATGTATCAAAGACAATACAATGATTATATTAGAGGATCATTTCTTGACTTGGTGTTTTTTAAGGATGCAATGACACATATTATTAAG
Seq A exon
GTTTGGGATTTGTTACTTTTTTACTAGCTTAACTATAAATATAGTTAATACAGAGTGTTCTTTAATCTTTAGGGATTCAGAAGGCACTGCAAGGGGATACATATCTGACAAGTGATGAAAACAATGTGAAGTAGAGTCTGATTGGATGAGAAACAAGAAAAGAGGTGTAAATATGAGCTGCAGCAGAAAGTTGTAGGGTAGAGGGAACTCTCAGATGACAAAAAAAAAAAAAAAAAAAAAAAGAACCCCTACTTAGAAAGACATAAGTGAACATTTGATTTGAAGTCAAAATTGAAATTAGCTTTAAAAAAAAAAAAAAAAGGCTGAGCATGCACTTTGTTGGAATCATGGAAGCATGGTGCCTCTGGTTTAAGAAGTTGTGTTGCTTCAGAAATGTGTAAGCTTGGTGATATATTTGCCAAAATAAATTTGGAAGCAACTTTGAAAGCAAATTGGAAAAAGAGTTTTATTCTTCTCTAGTTAATCTCAAGAGAATTAAATAAGTTCTTTTTCATTGAATTTGAGTAGAAGAAAAACATGTTATTTTTAGTTTCATTCAATGTGGCGTTGGATAAATTTCAGAAGATGGTGAAAGTCTCTGAATCTCAATTTCCATTGTCAAATTTTAACCAGCATATCTGGATATGCATGTGCGCAGTAGAAACACACTGTTGTGATTATAGTAGCAATAGATTTTTGTTACAGTCATAATGATATTAAAATAGACAACTAAGCATGGATAGACTCAGAGGGAACTGCATACAAAACTAAAAATAATTTTAAGGAACAGATTAATAGAATTCAAAAGCTTGATGTAAGCCGTGAAGTAAGCTATAGTATCCAAGAGTAATAGTTCACTACCATGTAACAAAACCAAGAAAGATGTAATACATACAGACGAGTTCTCAGAAGACAAAAGAAACTCACAAAATACATAAATAAATAAAACCAACAATAAAACAATAAATTTATAATCCAGCTTTTGTATCTGAGAGAATTGTTACAGAAATGACTTCAAAAAAGCACAGAAAGTAGATAGAATAGGTGGTCATGATCAAATTATTTTCTTCAGCAAAAACATCCAATTATTTCAAACTCTTAAAATTAATGTAGTATATTTCATTCTTCTAGATAACTTTTTTAATTTATATTTTTAGCTACAGTACAGTCAACATAGGACAGAGTCCTATGTAAATTGTCTACCTTTATGTATTTAAATTCTATGTGTGCCTCTAATTATAGCCATCCTATAGACTTCTGTCAGAACTCTTTCATTTAGTTCCACAAAATTCCTAAAGAATATACAGTTGTTCTTCTGAGAGGAAAAATTTTCTTTGAAACTCACTGTCCTTTTAATAACCTTTACATTGTATTCTACTAAATGAATTGTATTTTATGACAGATTTTTAGTTTTTCGAATTCATGTTTTGGGTTTTTTCTGTGGACTATTCTTTCTTCCTATATAG
Seq C2 exon
ATTTCCCGGATAATTCGAACCGCATATGGAAATGCTTTACTTGTTGGGGTTGGAGGTTCTGGAAAACAAAGTCTTTCAAGGTTGGCTTCCTATATTGCTGGCTATAAAATATTTCAGATTACTTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116:ENSGALT00000038200:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(8.1=53.7)
A:
NA
C2:
PF127802=AAA_8=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAAGCTTTGAGTTTCTTTGTGA
R:
TTATAGCCAGCAATATAGGAAGCCA
Band lengths:
230-1696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]