RnoINT0049207 @ rn6
Intron Retention
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9442150-9445791:+
Coord C1 exon
chr20:9442150-9442272
Coord A exon
chr20:9442273-9445660
Coord C2 exon
chr20:9445661-9445791
Length
3388 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCTG
5' ss Score
2.04
3' ss Seq
CACTCTTCTTTCGAACACAGATA
3' ss Score
7.15
Exon sequences
Seq C1 exon
GTGCCCTCCTTCGAATTTCTGTGTGAGAAGCTCCAGTTTTACCAGAAGCAGTTCAACGAGATCATCAGAGGGACGTCTCTGGACCTCGTGTTTTTTAAAGATGCCATGACTCACCTCATTAAG
Seq A exon
GTTCTGTTGACTTGACATTTCTTGGTGTGTGCAAGAGCCGTCCAAACTTAGTTCCCTAGGGGAACTCATTTGAGACCTCCCTTCCCCACCACCCTCTCACCCCACCCCCATCCCCCATCCCCCCCAACTCTGGTAGCCCAGAGAAGAAGAGCGTGGGTGGAGTCGGCGCACTGTTTCTAAAAACAGTGGATTATTGAAACCCCCTTAAATCCACTAACATAGCAGCGTGTGGTTTCCCGGGGCAGGAGGATTTGGAGTCCAGAGGTTTTGGGGTTCTGATTGTGAGCGCCCCCCCCATCCTCAGAGGAAGCTAGAATTTCCTGTGAAGAAATGCCCCTTCTCAGAGGTTTGCTTAATTATCATGTGTGCTGGTGTGGGTGCCCATGCCCGCAGAGGCCAGAGGAGGACGTTGGTGTCCTGCTCTACCACATTCTCCACCTCATTTCCTTGAGACGAGCCTGGTTCTCTGGAAGCCAATCATCTCCGATGATCTTCCTGTCGTAATGCCAGGAGTGTGTGATCATCCCTGGCTTTCTACGTGGGTTCTGGAATTTGAATCCAGGACCCTTTGATTGTACAGCAAAGACTTTTTTTTTTTTATTAACTTGAGTGTTTCTTATCTACATTTCGAGTGTTATTCCCTTTCCAAGTTTCCGGGCAAACATCCCCCTAATCCCTCCCCCTCCCCTTCTTTATGGGTGTTCCCTTCCCCATCCTCCCCCCATTGCCGCCCTCTCCCCAACAATCCAGTTCACTGGGGGTTCAGTCTTGGCAGGACCCAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGATATTCATTACTACCTATGAGGTCAGAGTCCAGGGTCAGTCCATGTATAGTCTTTAGGTAGTGGCTTAGTCCCTGGAAGCTGTGTAGCCCTGGCTGTCTTAGAACTTGCTCTGTAGACCAGGCTGGCCTAGAGCTCAGAAATCCTCCTGCCTCTGGCTCACAAGTGCTCCTTGCAATTAAAGGTGAGCACCACCACCTCCAGGCACACCGCATGGACTCTTGGCTGCTGAGACACACACACACACACACACACCCGCTGCTGTGGGGTTCTTGCTGCCCAGTGATGAAAAGACAATGTTTTTACAAAGTGTCAGCTTCGAGTTCCAAGTGCAGATTGTGGACAAACCGACTGGAAGGGGAAAAGACAGGTGCACAGATTGATGGGGGAAAAAATAAAAGAGGTAGCGTGACAGAATCTCAGATGGAGGCTTCAGACGTTATCCACTTACGTAATTGTTGAGGAATTCTCCCCAACACTGATGACGTCACGAGGGGACACAGCCAAAGTTGGTGGAATTCTTGTCTCAAGGTTTCCACAGGGTGCACCAACATACTAAACTCCCACCACAACAATGACTTGGGAGGCTCATCTAGATAAAAAAAAAACCCATAAATAATAAATATATTTCAAAACATGACCTATGCATAACCAAAGTGTCAAGTGTCATCACCCAGTCACCATCTGATATGCTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGCTTTTTTTTTTTTTAATAGTTACTCACATGGACTGGAGAAATAGCTCAGTGGTTAAGATCACTGGCTGCTCCTCCTGAGGATCAGGGTTCAATTCCCAGCACCTACAGAGTATCTCATGCTAACTGGTGACTCCAGTTCTAAGGGGTCTGCTGCCTTCTTCTGGTCTCCATGGGCACTGCATACACGGGATACACAGACACGCATACAGACAAACCATGTGCACACATAAAGCAAAATACATAAACTATTTTAAAACAGCTACTTTGGGTGATAATAATGGATTCAGCAGTCCATTTAGAACAGTGGTTCTCAACCCATGGGGCCCAACCCCTTGGGGAGGGGGTGTCGAACAGCCCTTTCACAGGGGTCACATATCAGCTATCCTGCATTTCATATATTGACATTTTGACTCATAACAGCAGCAGTTAGGAAGTGACGATGAAATAATTTCACAGTGTATGTGTGTCGGGGGGGGGGGTCACCACACCATGAGGGACTGTATTAAAGGGGCACAGTGTTAGGAAGGTGGAGAACCACTGCTCTGGAGTCTTCCTGGTTGGTGACATAAACATGAAAGATGGCTTTTTTTTTTTTTTTTTGCAATGTCTTCAAATGGCTGCAATAAGCCCAGAGTTACCTGTTATCCTTACCACAGAAATCTGTCACAGAGGAGTCACAGCAGTCGAAGGCCAGCTCCCACAGGCTCTTGCTAACAGTTNGTTCCTTTACTCTTACTAATCACTCCATCTTGATACTTTGTGGGACGAGATGGTGGAAGCAGTGTGTTCCTTGCCAAGGAGAGTACATTGTAACAGTTCCCAGTCTGCGTGATTCATTGTAACAGACTGCGTGGATAAGACACATTCGTTTTAACCTTGTCTTAAACTCTCTGTTTCCCCATCATCTACCAAGTCTAAAAGAAATTAAGTGGGGCTGGAGAGAGAACTCAAGAGGTTAAGAGCGTGATCCAGAACACTGGGCTTTGGTTCCCATGACCCACATTGGGTATCTCACATTCTTTGGTTCCCATGACCCACATTGGGTATCTCACATTCTTTGGTTCCCATGACCCACATTGGGTATCTCACATTGGGTTTAGACTCTAGCTTGAAGGGATTGGATGCCCTCTTCTGGATGCCTTGTGTATCTGTTCAGATGTACACACACACACACACACACACACACACACACACACACACACACCCCAATAAAATAAATATTAAGGAAAATTAGTAAAAATAAGTAACAACACTTGCACATATATGGAGCAGAAGAGTGAAAGCAGTTTGTTCTTTTCTATGATGCTAATATAGGCAGGCAAAGAAGGACCTGAAAAGGCTGCAAAGACAGCTCAGTTTAAGAGCACTTGCTCCACTCCTGCGGTAGACCCAAGTTCCGCTCCCAGCACCCATTTTGGGTGGTTCATAATCATCTGTAACTCCGAACTCCCGAGGATCCAGCTCCCTATTCTGACCTCCACCCCCCCCACACACACACATGTCACTCACACACACACGTCACACACACATGTCACTCACACACGTCTCTCTCTCACACACACACATACACAAATTGAAAAGAATAATTTGATTTAAATTAAACAATGTGACACATTCAAACAATAACAACAACAAAACCCCCAAAGGGAGCATTATAAGGAAAGAGTTGGATGTAGTCTGGAAACACGGAGTCAGACTTCAGACCTGTGAGTAAAAGAATACATAGACATTTGCATCCGTTTTTCCAATAAACACTCTTCTTTCGAACACAG
Seq C2 exon
ATATCTCGGATCATCCGGACGTCCTGTGGGAACGCATTGCTGGTGGGTGTTGGCGGCTCAGGAAAGCAGAGCCTTTCAAGGCTGGCCTCTTTTATTGCTGGGTACCAGATATTTCAGATAACATTAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542:ENSRNOT00000000651:72
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(18.7=56.1)
A:
NA
C2:
PF127802=AAA_8=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]