MmuINT0051167 @ mm9
Intron Retention
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30897951-30899716:+
Coord C1 exon
chr17:30897951-30898073
Coord A exon
chr17:30898074-30899585
Coord C2 exon
chr17:30899586-30899716
Length
1512 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCTG
5' ss Score
2.04
3' ss Seq
CACTCCTCTTTCAAACACAGATC
3' ss Score
7.27
Exon sequences
Seq C1 exon
GTGCCGTCCTTCGAATTCCTGAGTGAAAAGCTTCAGTTCTACCAGAGGCAATTCAACGAGATCATCCGAGGGACGTCTCTCGACCTGGTGTTTTTTAAAGACGCCATGACTCACCTCGTTAAG
Seq A exon
GTTCTGTTGACTGACTATTTCCTGTGTGCGAGTGCCGTCAAAACTTAGTTCCGTAGGGGAATTACCCTGGGAGCACCCATCCCACCAGGGAGACCAGAGAAGAGCAGCCATGGATGACAGCTAGCTCACTGTTTCTAAAAACTGTGGATCACCGACGCTCATGCGTCCACTAACACAGCAGCACGTGGTTTCCAAGGGCAGGTGGATTTTGGGTCCAGAGCTCTTGGGGTTCTGATTCTGACTGCTCCCCATGCTCTGAGGAAGCTGGAATGGCCTGGGAAGAAATGCCCCTTCTCAGAAGTTTGCTTAATTGCTGTGTGTGCAGGTGTGGGTGGCCAAGCCCGCAGAGGCCAGGGGAGGATGTTGGGTATCCTGCTTTACCACACTCTCTATATCATTTCCTTGACAGGGCCTCTCACTGATACTGGTTCTCTGGAAGCCAGTCTTCTCTGGCGATCCTCCTGTCGTAATGCCAGCAGTGTGTGATCATCTCTGGCTTTTTACATGGGTTCTGGGATTTGAACTCTGGTCCCTTTGATTTCATAGCAAAGATTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGCAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCCCAGCCACAGCATGGACTCTTGTCTGCTGAGCCATCCCCACAATCCTGACATGGGGATCTTGCTGCCTAGGGATAAAAAGACAAGGTTGAACATGTATACACACACACACACACACACACACACACACACACACAAATGAAATAAATGTTGAATATTATAAATGAAAAATCAGTAATGACACTTGCACATAAACACACAGAAGTTACAAAGCTAAAGAGAATGAAAGCAGATGCAAATATAGGCAGGCAAAGAAGGAACTGAAGAGGCTGCAGCCACAGCTAGCTCAGTAGTTAACAGCACGTGCTCCGCTTTTACAGTAGACCTGAGTTCAGCTCCCAGCACCCATTTTGGGTAGCTCATAACCATCTGTAACTCCAGCTCCTGAGGGTCCAGCGCCCTCTTCTAACCCCCAAGGATACCCCAACACAATGAATGTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACTCACACACAAATACACTCATACACAAACACACACACACATGCATACACACACACACACACATACTCACACACACACTTATACACACACTCACACACACACACAAACACACACTCATATACAAACACACACACACACATGCATACATACAAACTCACACACACACACACACACACATTGAAAAAATGATTTAAATAAAACATTGTGATACATTCAAACAATAACAAGAACCCAAAATGTAGCATTATAAGGAAAGAGTCTGATGTAGTCTGGAAACACGTGGTCAGACTTTGGACCCGTAAGTGTAAGAATGAATATATAAACATTTGCATCCGTTTTTCCGATAAACACTCCTCTTTCAAACACAG
Seq C2 exon
ATCTCTCGGATCATTCGAACCTCCTGTGGGAACGCATTGCTGGTGGGTGTCGGTGGCTCAGGAAAGCAGAGCCTCTCAAAACTGGCCTCCTTTATTGCTGGGTATCAGATATTTCAGATAACACTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-Dnahc8:NM_013811:61
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(8.4=56.1)
A:
NA
C2:
PF127802=AAA_8=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTCCTTCGAATTCCTGAG
R:
TCTGAAATATCTGATACCCAGCAA
Band lengths:
239-1751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: