GgaINT0088316 @ galGal3
Intron Retention
Gene
ENSGALG00000016330 | ANGPT2
Description
NA
Coordinates
chr3:91429787-91432786:+
Coord C1 exon
chr3:91429787-91429908
Coord A exon
chr3:91429909-91432553
Coord C2 exon
chr3:91432554-91432786
Length
2645 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
AATCTTAATCTTTTATTTAGCTT
3' ss Score
5.24
Exon sequences
Seq C1 exon
GTACTAAACCAGACAACCAGACTTGAACTTCAGCTTTTGGAACATTCCCTTTCAACAAATAAATTAGAAAGACAGATTTCTGTTCAGACCAACGAGATAACTAAATTACAAGAAAAAAACAG
Seq A exon
GTAAGCAGCCTATCAATTTGATAAAATGCTATTCCTTTATGTACTTTTAGAAATGCTTATGTGCTTTTACTGGTTTTAGAACTATATTTATTGTGTTATTTATTTTTTTTTAACTTCAATGTTGAAATCTTACTTTTTTACTGAAATTGTGACATTTTTCAATTTTTTTTTGTTTTTAGAATCAGCAAAACGCTGATTAAATTTGTTGATTCTCATTTCTCAGTTACATTCTTATTTTTATACTACTCTTCTACACAACTGCATCAGCTTTCTGTTATGGGAGGAACATTAACTTTAGTAAATTTACTTGTTCCAGTTACAATTCTACTTTTACGCAAAGTACTTGTAGAGAAAATTTGTGATTATGTTCCATAAAGGGGAAAAAATGGCTTGTTTCATTAAATGACAACTGTTCAAGAATTTTCCTTAGAACTGAAAGCCTAATTTTGTGACAACTGAAGCTGATCTAAAAATCCGAAATGCTTGTACTAAGAGAAGAGTACTGGTGATTATCCTCACTAAGACAAGCAGATGAATTTTCAATCATATCAATTCCCTGAGTTGGTTTACTTCCTGGCCTCAAACACCTCTGCTGTGCAAAGAGGAATGAAGAGAAAAACAGATTGTAGCAGCCCTAACATTTCATTAGTTTATTACCAGAGAAATACTTTCTAATGGTTTGCCCCATGATACAAGCTTTTCATGTTGTCCCGAGTGTCCATTAGACACTATATTGTACACTGATTCTGTGGCAATAATATATAATATTATGTATACTAATATTATATCTGCATGAATGTAAGAAATTGTGTCAAAACAGTTCTTTTTATGAATACCAACAATTTATTTCTATGATTTGTTTCTTACTGGCATATAGTAGTAGCAGTGGACTTCTCTGGGAGAAAGAGCCCCCAGTTTTACTTAGTTAAATAAATATAACAAGAAGTGTGTGAGAAGATACATTTTTCAGATACCAGAAAAGCCAGGAAATAAAGCCTGAGACTTATCTTATTACTAGGCTTTTCACAGAAGCTTCCTTCACTCAGCTGTGCTCACGATAAAGGTCATACACTATGTAAGGCCTAGAGAATCACACCAGTCTGTTATTCTTGTGTTCTCTTTATATACCATTCTTCATTACCTGAAGTATTTTTTCCGAGGAACTTAAGATTAAAAACTTTCAGTATGTCAGTTTTAGCCAGTTCATACTCTTTAGACTTAACCAGATGAAGCTGTTAGTTATGAAATCTGACTCTAACTCACTGCAACCACATCTCTTAACATTTTATTTCCATTAAGCACGCAGGTATCTTACCCTGAATCAGGTCACGGCCACAGTCTTTTTCTGATCTCCTGAGAAATGTCAACTACTATTCATATGAAATTCCAAACTACTGAACGTTCTGAAATTCAGGACAGTATCCAACTACTGCTTTTATCCATTTTAGTACTCAGCTGTTGTCCAAAGGCTTATGCCTTTTTCGTTGGCTAGGCCTGAATATCATATCACCAGAGTCCTATTTTACTTTTGTCAATAAACAATTTAGAGTGAAATGTAAAAGCAGAAATAACAGTACATTTTTTTTTCCTTCAAAGTCAATGTTTTTCAATGAGAACCACATGTACAAAGTGCTTTTTTAAAAATTTAAAAGACAAAAAAGAAAAAAATCACAGGAGATGTCTTGACATTTTGGTTCACTACTTTACTTTATTTATATAAGCTCCATAAAGGTTTTATCTACCTGCTTAATAAGAGCAGGTATCGTTATCTAATGTAAATGTTTTTAAAATCTGAATGGTTTTTGTGTTGAATGCAGTAAACTTTAAGATTATCTTTATAAACTCCAAGTAAACACAAAAGCACTATTTCTCACCTAACAAAAGATGATCTGACATTTGAGCTTATCTGCTTGAAACATAATTAAAAGGTTCAGGAGTTTTTTCAATAACAGCAATGGCTATTAGGCAAACTTCACCCCTCTGGCTCTGCATCTTTTAATGTTAGCTCTGTCTGCACCAGAACCAGTGCAGTAACTTTCCACCTAATCACCCATTCCAGCCAGCTCCCATGCTGGAAATGGATATGGAACTATTTGAATTTTTCCAGGTCTTAACACTATAATGTATATTATCTATATTGCATATTATAAATAACATATATTGTCAAACAAACAAATATATTTTTATAATTACATAATTTATTTAATGTGTTTATATAAATAACAGTTACCATAATACATGATATTTGAAAAGTTTAAAGGTTTATCTTTAAATTATTTTTGTCTTTTAAGAAGATAAAAACATGCAGTCCTTCACTATTATGCCTAATCTCTGAGAGAATGGTATTCAAGACACTTCAGTGTCACAAGCAACAGTTACCTTGGATCTACAATCATTTTATACCGATTCTTCATGTACTACTAGAACTACCATCTATTTTTCAGGACTAAACAATATCAACATTTCCTAATGTTGAATTAAGACCCAACTGATACGCTTCAAAAGCTTATAATACAGCTGTACTAGATAATATTTATGTACTAATTAGTCCTATAATAAATGAAAGCATACTTGTAACAGGCTTAATTCTGTTTACATCAGTTCAGAATTGTTTCCTGAGGTCCTAATCTTAATCTTTTATTTAG
Seq C2 exon
CTTTCTAGAAAAAAGAGTTCTTGAGATGGAAGACAAGCACACACTTCAGCTGAAGTCAATAAAAGATGAAAAAGATCAGCTTCAAGTCCTAGTAGCCAGACAGAATTCCATTATAGAAGAACTAGAAAAGCAGTTAGTTACAGCTACGGTAAACAACTCCGTTCTGCAAAAACAGCAACATGATTTGATGGAGACTGTTCACAACTTACTTACTATGATATCTACACCAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016330:ENSGALT00000026341:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF041569=IncA=FE(19.9=100),PF0497710=DivIC=PU(63.8=73.2)
A:
NA
C2:
PF041569=IncA=FE(38.8=100),PF0497710=DivIC=PD(34.0=20.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]