HsaINT0007978 @ hg38
Intron Retention
Gene
ENSG00000091879 | ANGPT2
Description
angiopoietin 2 [Source:HGNC Symbol;Acc:HGNC:485]
Coordinates
chr8:6521178-6527676:-
Coord C1 exon
chr8:6527555-6527676
Coord A exon
chr8:6521411-6527554
Coord C2 exon
chr8:6521178-6521410
Length
6144 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
ACAATTCTTTTCCTTACAAGTTT
3' ss Score
4.86
Exon sequences
Seq C1 exon
GTATTAAATCAGACCACGAGACTTGAACTTCAGCTCTTGGAACACTCCCTCTCGACAAACAAATTGGAAAAACAGATTTTGGACCAGACCAGTGAAATAAACAAATTGCAAGATAAGAACAG
Seq A exon
GTAATAACAGTACTAAAACATTTATAATTCAGGACTGCACACTTTCCAGATATGAAAGTCGGTCTCAAATGATGAATTATCAGAATGGTGAGTTTCTTCATGTCTAGTGTAAGGGTCAGAAACCTCATGAGGGAGGAGAAGGGAGAGGGCTTGGAGAAAATTCCTGCACAGGCACAGCTCTCCTAACACAGTCCTGGATTTTACCTTTCATTCCCTGGCCCCTTAAAGATCCTCTTAGAGTAATCCTCCAAACCCTGCCTCAGTATTCTGCATGCTAATCTATTATAAAAATACAGCTAGTGCTGTGGAGTGAAAGAACCACTGGCCCAAAAGATCCTCTTAGAGTAATCCTCCAAACCCTGCCTCAGTATTCTACATGCTAATCTATTATAAAAATACAGCTAGTGCTGTGGAGTGAAAGAACCACTGGCCCAGGCATTTTATTTCAGTATTAACTTGACCAAGATCCTTTGCCCTTGGGGACTTAGCTTCACTCAACGCAGAATGGTCTATAGTATGAAAGCTACACTTATACTGTAAGCCAATGCACATTTTATGATCCAATGTTTCCTCTTCAAACACACGATAAAGTAAAACCAAAAATATTAAACATGATTATATTAATATTTAAATAAAATATAGAAAAATCTCAAGATCAACAATAGAAAAAAAATTGTAGGGGATAGGTGGGGACTGTTTTCATATGTCTGTTCCACTTGGGACAAAAGAGGATAATTTTATGCACATACCTGGTGTGCCTATTTCCTTGTTTTTAATGAAGACATGTATATACAACATGGAACATGGCTATAACAATATATCCTATTTCACAATTTAAATAATTCTTTATTCTTAACCAAAAATGATAAACTTCTTGTTCAATAATTGTTCTTTACTGTTAATCAAGAACTAAGCTGAAATAATTCTTTCTGTCCTTTGGATACCAAGTTTAAGTCATTATTGATTTAGGGTTTTGAAAAGCAAATAGATTTTTAAAATTCAAATATTTTTCTTTCATGTTTCAGATTTCTCCTCTACAAACAGTAAATGAACATTTGAGACCAATCATTGAGATATAACAATCCTGCTAATTTCATTTTCTTTTCTGTGTTTTTTTTTTGAGACAGGGTCTCACTCTGGTTGCCCTGGCTGGAGTGCAGTGGTGCCATCTCAGCTTACTGCATCCTCAACCTCCTGGGCTCAGGTGATTCTCCCATGTCAGCCTCCTGAGTAGCTGGGACTACAGGCATGTGTCACACACCCAGCTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTAGAGGCAAGGTTTTGCCATATTGCCCAGGCTGGTCTCAAACTCCTGAATTTAAGCCTTCTGCCCACCGCAGCATCCTAAAGTGCTGGGATTACAGGCATGAGCCACCGTACCTGGCGTCGTTTTCTTAAAATAGTCTTACTTAGTAATGTTCTCTTCAAAATGCTGCAGTGATTCCTGGAACACATGGGAGCTGGAGATTACTTTTCTCTTGCCTGTTATACAATGATGTCCGTGACAAACCTAGGATATGTCCAGTTTGTAGAACATACCCTAATACTGAATACTGTTTCCCCACTTGGGTTTCAAATTTAGCATGCTACAATGCTAAAACTACCAATTTGGGTCAATTATGTTCCCCAAATATCATCTTTGCAAATATTTTTCCAATCATATTGGCTTTCAACTATGCCTGTAGGAAGAATAAGCTTTTTCTCATCAGCTGTAGAAATCGTATTTTTTTGTCACAGATATGAAAGGAAATAAAAAGGTTTTTTTCATCAACAGCTATAAATAATAAAAAAAGAAAATAGTGTTGATGATTTTACAGGTGTATGAGTTCTGCATGCTGTGTTTTCTACCTTAATTCTGACTGGCCTATGATTTTATTTGCAAGTATATCATTACAAAAATATGCAAATGGTGTTTCACATTGGACAAACCACATTTTAAATAATCTTTTATAATTCCCCAAAAGTGCAATTGCTTTCTTTATAGAATAGATTCAAGCCAGGCACAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCAGAGTGATAGGATTTCTTGAGGCCAGGAGTTTGAGACTAGCCAGGGCAATATAATGAGAACTCATTTTTACAAAAAATACAAAAATTAGCCAGATGTGGTGGCACACACCTGTAATCCCTCCTATTTGGATGGCTGAGGCAGGTGGATCGCTTGAACCTAGGAGTTTGATACCAACCTGGGCAACAAAGACAGACCCCCATCTCTCCAAAATTACATACTAATTTACAACGATCAGGGGGCTGGAATACATTTAAGAGCTACAATTGAATATCTAATAATTATTATTAATACTGATTGTTATTGCTTATGGGCGAGATATGTAATGGGTAGCCAGTTCCTTGGCTGGTTAATATTGTTTGCAGGGTTAAAGAGTCAGAAAATGTTACTGTCAAAAAAAGGTGGATTTACCAGATCATTCGAACTAAAAGGGGCCCGAGAGGCCATGAAATCGAATGCCTTCATTTTACATAGAGCTTTATTTAGATAGATATTCACCTAGACAGACATGCACCTGAGGTCCACAGCAGGGTGTCTGCCCTTGTGACACAGGAAGCCATGTGCAGAGGTGGGATTCCCAGCCTAAGGCTACTTCCTTTCACCTGAAGGTGCTCGTGACACCAAAGGTGACTTCTCAGGGTCTCCATTTTCTCTTCAGTGAAACCATGATCTTCATATGTATTCCCTGTGATAACTTCTATTTACAGACCTTACATGGCCACAAGGGTAGTTTTTCCTCAAGGGAGACATTCATAGCCTTGTCTTTTTAGCTTGATGATGTGAAGACCATCAAAACATCTAAATTTCCGCAGGCTTAAGACTATGGTTCATGATGCTTTCATTTCTTGATTTTTCTCCAAAACCCTAAAAAACACCTCGTACATGGTAGGTGTTCAATACATCTCTGTTAAACGGAAGGTAAGACGTGATCTGAACCCAACTATCACTCAGTGAAACGTGTATGTCAATTTCACATGCTTTCGGTTCCTAGGAAAGTAAGTGCAAAGTGACTCAGGAGGCTTCAGATAACTCACAGCAGTGTTAAATGGCCGGTTCAAGGTTTCTTTATCAAGCAGGTGGGAAAATAATGTTTCTCTGCTCTTCATATGCCTTCGCAGAAAAGCTAGTGAAATGTATAGAATATTTCACCAGCTTCTAATGTGACATTAACAGAAGCTGTGGTAACTTGTTAGTAGACAGAAAATAATTCTGAAACATAAAGATGCCATCATTGACATATTTCATTATTAAATAAGACAGCTGACTTATACGGGACTCAAAAAAGGGAATATGAGGTCCCCTTCCTTTAAAACAAAACTCTGCAATGTGCAAATTCATGTGTACTAAACTTTATATTGGAAGGAAAATGTCAGAGAGAGGAATCTGACATCTGGTCACTGTTTTTCTATTTTTAAAAGTGTCTATATTTTGAAAGCTTTATTTACTGGCCTTGTACAAACAAAATGAAGATATTGAAACATCTTTAGTTGCTGCTTTTCCTGCAATTATCACAGAAAGCCTCTTTAGGTGCTGAATAATGTAGTGTCAGGCTATCCAATTTTCCTCTTGTATCTTATTAAAAAAAAAAAAAAATGCCAGCCAGGCACGGTGGCTCATGCCTGTAATTCCAGCACTTTGGAAGGCCGAGGTGGACGAATCAGGAAGTCAGGAGTTCGAGACCAGCCTGGACAACATAATGAAACCACGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCACACCTGTAATCCTAACTACTCAGGAGGCTGAGGCAGGAGAACTGCTTGAATCCGGGAGGCGGAGGTTGCAGCGAGCTGAGATCGCGCCACTGCACAACAGCCCAGGCCACAGCGCGAGACTCCGAGACTCCATCTCAAAACAAAAAACAAAAAACCCTGCCAAATACCTTGACTGTGCATGTCTTTGAGTTTGTTCCTGGGAAACAGTTAACATTCTCAAATACATAGTCTCTACTCTCTTGGATTTGTTTCCTCTGGCTTAATGGACAGGAACTATTTTTAGTTTAAAAGTGGTATGCTCTTCATTGAACATATTTATAGCAATGTATGTTTATAAGTTGAAATTAGGAAGGCAAACTATATAACCATTAATAAAGTATCTTAGGACTTACATGGCATAATTTTACCAGCTCTCTAAATAATTTTTAAAAAGCTTTTCTGCCAGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCAGGGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACCCTGGCTAACACGGTAAAAGCCCATCTCTACTAAAAATACAAAAAGTTAGCCTGACATGGTGACATGCGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATAGCTTGAACCTGGGAGGTGAAGGTTGCAGTGAGCCAAGATGGCACCCTTGCACTCCAGTCTGGGTGACAGAGCGAGACTCCATCTCAAAAAAAGAAAAAAAAAAACTTTTCAAGGGCTTGGCTCACATATTAACTGTTATGTATTAAGTACATGCCATAGCGCTGGTTAGATTTTTTAGAGAAGGAATGGGGCCACATTAAAAGGAGAGAAGCAGATTTCAGAGTCAGAAAGTTCTGGGATTGTATTCTGCCCCTGCCACCTGCTGTGTGTGACTTTAGGTATGTGATTCATTCTTCCTACATTTCTTTTCTTTTCTTTTTTTTTTTTGAGACGATGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAATGGCATAATCTCAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACATTCATGTACCCCCACGCTTGGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGCCTGCTCTCAAGCTCCTGGACTCTAGTGATACACCTGCCTCAGCCTTCCAAAGTGCTGGGATTATAGGTGTGAGCCACTGAGCCTGGCCCTCAATGTCCCTAAGTTTCAATTTCCTCATTGGAAATGGGAATAATAATGTCTATATTAACGTTAACAAACATTCATTGACTGTTAATGTATGACAGGCGCTAGTCTAAGCGTTTACATTTTTTTTTCTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAAGCTCCGCCTCCCGAGATCACGCCATTCTCCTGCCTCAGCCTCCAGAGTAGCTGTGACTACAGGCGCCCGCCACCACGCCTGGAGAATTTTTTGTATTTTTAGTGGAGACGGGGTTTCACCGTGTTAGCCAGGATACTCTCAATCTCCCGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACTGCGCCCGGCCAGCATTTACATTTTAAAACCCATTTGTTCCTCACACCAACCCCATGACCTAGGTGATAGTATCCTAATTAACAGGTGAGGACATTAACGCATAGGGTGACTAAGTAAACTGTTCCAAGTCGCAGGGCTGGTAAGCCAGTACTTGAGTCTGGGAGAAGTATTCACCTCCCCATGAAGGAGTATTTCTCACATAGCATTAAGTGCTATTATTATCATTAGGATTAATATTAAAATATAAATAGTTTAGGAGAAAGCTAATATCCTACCCAAGGGTCCAGCCCAGTTGAAACTCTCCCTTCTCAAAAAAGCACTTCATGAGCACTAAGCTTGAAAGAGCAGCACCTTTCTTCTGAGCGCTGCAGCATCTAATACAAAAAACACCCATATCCCACCTATCCTGGACCAGATGGGGTACCTTTTCTTGTGTGTATGCATAAGTCTGCATGTACATACATATATGCTTATACGTTTACATATATACACACATTTATATATCTAATCTTCTCAGCAAGTTTCAGAGATTCCTTAGGGCTCTGGTAACATCATATTACTTTATAACCACTACAATATCTTAACAGAGTACCTTGGAGAAGTAGAAATTCAATAAATATAAAATATTTCATTAGAATAGCCTTCACTAACTAACAATTCTTTTCCTTACAAG
Seq C2 exon
TTTCCTAGAAAAGAAGGTGCTAGCTATGGAAGACAAGCACATCATCCAACTACAGTCAATAAAAGAAGAGAAAGATCAGCTACAGGTGTTAGTATCCAAGCAAAATTCCATCATTGAAGAACTAGAAAAAAAAATAGTGACTGCCACGGTGAATAATTCAGTTCTTCAGAAGCAGCAACATGATCTCATGGAGACAGTTAATAACTTACTGACTATGATGTCCACATCAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091879:ENST00000325203:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.066
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development