RnoINT0017299 @ rn6
Intron Retention
Gene
ENSRNOG00000016696 | Angpt2
Description
angiopoietin 2 [Source:RGD Symbol;Acc:621861]
Coordinates
chr16:75997577-76002265:+
Coord C1 exon
chr16:75997577-75997698
Coord A exon
chr16:75997699-76002032
Coord C2 exon
chr16:76002033-76002265
Length
4334 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
ACAAACCCCTTCCCCTTAAGCTT
3' ss Score
5.03
Exon sequences
Seq C1 exon
GTACTAAACCAGACGACAAGACTCGAGTTGCAGCTTCTTCAACATTCTATTTCTACCAACAAATTGGAAAAGCAGATTTTGGACCAGACCAGTGAAATAAACAAACTACAAGATAAGAACAG
Seq A exon
GTAATAATGCTGTAACCTTTCTAGACACTCGGCTTATCTCATGTGACTAGACTCTATGTATGGCTTCCCCAGAATGGTGGATTAGCCTGGAGCATGTATGGGTCAGAAGCCCTGAGAACAAGAGGCAAGGAGAATTTGGAGAAAATCTCTGAAAAGAACCCGAATTCCTGATTAGTCCTGAATTTTGTTCTCGTTCTGTGCCGTTAAAGACTCTGCAGAAATCTTCCACATTGCCTCAACATCATGAAGGTTAATCTCCACAAAATACTGCTGGGCTGTGAGGTTAACACTGCCTGCAGTCATATTTCCTGGCCTTTGGTGGGGAGTTCTCACTATGTAGTCCTAGTTTGCCTGAAACTTACCATATAGACCAGGTTAGCCTTGGACTCACAGAGATATGCCTGTGTCTGTATTTCTTGTGTTCGGATTAAAGGCCCACACCACCATGCCTGGTGGGGATCTTGTTTCTTGCAAGATGAACCACACTAGGAGCCCTGGAACAGCCTCTGCTGTGTAATACTTCCTTTTTATAACTTAGGATGAGGACTGGAGAGAGGGTTCAGTAGGTTAAGGTGCTTGCCAGATAAGCCCGACGACCTGAGTTCAATTCCCAGAGCGCACATAAACACGGAAGGAGAGAACCAACTCCACCAAACTGCCAGCTGACCCTCCTGTGCAGCGGTGGGATGTGTCTACTGCCCAGCCCCCACACCCTCACTCACTCACATGTCACTCGCGTGCACTCATACACCAGTAAATACCTTTAAAACCTCTTGATAAACCAAAAGGAAAAGTTAACCTGAAACAATTGCGTTGATATTTAAATTAAATATTTAAAACCCTTCAAAATAATCTATGCAAGTGCAAACATCTGCTTTGCGTGTTTATTCCACCGGGGACACCTGAGGGTACAATGTCTGAGGTGCTTCCTTCCTTGTTTTCAGTCGAGACGGCATCTGACACAGAATGGTCTACACAGCACATCTCTCTCTTATCCAGAAAAGGGGATGAACAGGGGCTGGCTTCATCCTCGGAGTTAACCAAGAACTAAGCTGCAGTTAGTCTCTGTGTTCTCTGGGTAACCAGGTTTACCCTCACTTTTATTTAGGGGATGGAAAAGCAAATAGATTGTTTTTCCTCTCTGAACAGTTTCCTTTCCTATTTTGAATTCCCTGTCTGCACAGTAAGAGATGAGAACTTGGGACGGTAACCGAGACGTAAGCAATCTCATCTCCCCTTGGCAGGGCTCTCCCTGTAAGCACACCGCACACACCACCTCTCAGAAACCAGGCACTGCTCAGCTTCTTGAACACATTTCTCCCCAAGGCTTTAAAATCAGGTCAATATACCCACCGTGCCACCTACTTCTTCTCTGTAAACTCTCCCATCATTCGCGATGCACAGGGCCTTGGATCTCTAATCCACTTTGGACCCTGAAGTCCATGGATACTCCAGTCCCTTATATAAAAAGGGATGGCATGGCCCCAAAGCCTGCATAATTCCCCTCTATATTTTAAGCTGTCCCTATGTTGCTTATGGATAATACACAAGACAACATAACAACTGTGTTCAAAATTCTGTTGTATTACGGGGGAGTAATAACAAAAAAGAGGGTACAAGCTGAGCATGGATGAAGTAATTGAAGACTAGTGTGATGGACCCACAGATGCAAATCTGTGGCTATCAAAGGGTAATCGTATTCGCCACTGGTTTGCCTTTTTTCTCCAGAAAAGTTCAAGTCTTGCTCCTTATTTTATACCCACTGTTGGAATAGAATTTGCTATTCAAAGAAAACTGCTTTGAAATACACAGAAACTGCCACTACATTTTAAAATTCATCCCAAGGTTTGGTGTAATTTTTTTGTGAATCAAGGCTCTGCTCTAGAGAATAGTGTTACCGATCTTGGTGCAGCCTACTGAGGGTCTTGCTTACGAGATAGCCTGCAATCCACCCCTTACTGAAGGCCTTCATATCTCCCCTAGTTTAATTGACCTGAATCAATAGATACTGTGCCTTTCCAATAAATTAAAGTCATTTTGAGTTTATGATTAAACTGTGGAGTTTCCCCACGGAAGCACCTTGCCACACGTATCTAACAACATGGAAAGTCTCTCTTGCTCGGACCAACAGTGCTTCCTCACAGCTTGAACTGCTAAAGAAATCTGCCTGGGATGCTCCTCGTTGGAGCTGCCTTCCTGGGGATGGGTGCACGAACTCTGATTTACCATTATAAACCCATCAGTAACGAGAAGCACACGGAAGGAACAAGAATCTTACAAGCTGCGGAAATTGTCTTCTCTTCTGTTACAAATATGGGTTGGAATAATAAGTTTTCCCTGTCAAGAACCTCAGGAAAGCTCCTTGATGACCTAGATCTCCTGATGGTCTTTCCTGCCTCCAATTCTGACTGGCCTAAGACTTTTAATAATGTGACTGGAGAAAAACATGGGGTATTCCGCATTCTACAAGTGATTTTTCAACAATCTTCAAAATTTCTTCAAAGTGAAATTGCTCTCTTTATAGATTCAAGCAAAATTACAAATATTTATTGTGATCAGCATTTCCCTCCAAATCAGCGCTACTGCACGTTTTGGTTCACCAGCTGAAGATACTTTTACTGTGCATGCTCTTCATCTGCCTACTTCCTCTCAGAAACAATTAACTGACGCTGGGCTTGGTACCAGTGCCATGACGCAGGAAGCAGCCGCTGGTTCTGTGCGTGTGCTCAGAGGAAAGGTTTATAGTCGGGCTCTCCACTCTTCCGTTCCCCCACTGACAAGAGCAGCTGTCACAGGCCTTCACTGCAGGAGTCTGCTCCTGGAAGTGGTCAGTCTTAAATGTCTCACATTTATTTAAGCCTACACACTTGGAATTGTTTTCTCCAGTTTAATATATAGGAATAATTTTCAGTTAAAAATCAGTACACTCGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAATCAGTACACTCTTAACTGATCTCTGGGTAGCGATGCATCTTTATAAATCTTTATCATAGGATCAGAAATAACTACAAAATCATTAGTAAAGCCTTTTGAGACTTCTATGGCATAACTTTATCAAGGAATTTTTAAGCAGCTTTTCAGGGGGTTTGCTTAGGTTACAGGATTGAGTACCCACTATAAGAAACAGGCTGATTAAACTCCCCAGAGAAAAATGGATTCAAATAAACCAAACCAAAACCTTAAACTACAAGCAAACAAAAAAACAAGGAGTTTACAGTAAGGAAGAGCTGGCAGCAGCCACCTGGGTGTGTCTGTGGGCATGTGATTTACTGTGTCTAAATTTTACTTTTTGCTCATTTACTCCTTGAACATGAGGTGATAATGTTGATACTGGTAATAATACTGCTTAAGTGTTAACTACCAGCCTGCTTATACTTGTACACGCATTCCCTGGACCAGCCTCTTGCAGTGGGTCATATTAACCCAGTTTACAGATGAGGGAACCAATACACAACTGAATAAGTCACTTAATGTCATAAAGCCAGAGAGGCTTATGAGGGTTTAAACCTGTGGGTGACATGCACCTCCCTCATAGAATACCTGCCACATGGCATCGTGAGTGTCGTTCCTGTTATTATGATTCCTGTGAAAATGTAAATATTCTAGGAGAAAGGCAACACACAGCCCAAAGGTCCAACTCAAGCTCACCGCTCATACTCAGGAAAAGCACTCTGAAAGTGGGGCTTGAAATAAGGCCACCTCCCTAGAAGCCGTGGCAGGCAGTGCTTGTGACACTCTGTCTGTCACCTAGGCCCAGTGTTCTCCTGACTAGACACCACTGCACACTCCTCTGTCAGGTTTACCCACATGTACAACTACCCCTAAATAGTTCCCCTTGGTTTCACTGGGTGGTGAGAAATCTCCCTACTTAAGAAGACGTTTGTCTGTTTTAAAGGCTTCTTTATGTTTATGTGCAGAAGCTTTGCCTGAATGTAGGTATGCGCAACATGTCTCAGGAGGGCATCTGATCCCCTAGAACTGGGATTACGGAAGTGAGCATGCTCAACGCTATACATGAGAAAGTGGAGTTATGGGTAGTTGTGAGCCCTAGGGCTGCTGGAAACTGAAGTCAGGCCTTCGTCAAGAGCAGCTGGTATGTCTAACCACTGAACCACCTCTCCAGCCTCCAAAACGTCCCACTTTACACTGTGTGTTAACCAAACACCGTTGCAGCACAGAAGTCCAGGGAACAGAGAGGTTTCTTGGCTTTGGAATGGACGGGATTTTATCAAGTTCTTGGCTGGCCAGGCCTTGAGGCTTGTGGAAATCCCTTTACTTACAAACCCCTTCCCCTTAAG
Seq C2 exon
CTTCCTAGAAAAGAAAGTGCTGGACATGGAGGACAAGCACAGTGTGCAGCTGCAGTCCATGAAGGAGCAGAAGGACCAGCTTCAGGTGCTGGTGTCCAAGCAGAGCTCCGTCATCGATGAGCTGGAGAAGAAGCTGGTGACGGCCACAGTCAACAACTCAGTCCTTCAGAAGCAGCAGCATGATCTAATGGAGACGGTCAACAGCTTGCTGACCATGATGTCATCGCCCGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016696:ENSRNOT00000022774:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]