MmuINT0015002 @ mm10
Intron Retention
Gene
ENSMUSG00000031465 | Angpt2
Description
angiopoietin 2 [Source:MGI Symbol;Acc:MGI:1202890]
Coordinates
chr8:18705651-18710640:-
Coord C1 exon
chr8:18710519-18710640
Coord A exon
chr8:18705884-18710518
Coord C2 exon
chr8:18705651-18705883
Length
4635 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
CAAACCCCTTCCCCCGTAAGCTT
3' ss Score
2.72
Exon sequences
Seq C1 exon
GTACTAAACCAGACGACAAGACTCGAGCTGCAGCTTCTCCAACATTCTATTTCTACCAACAAATTGGAAAAGCAGATTTTGGATCAGACCAGTGAAATAAACAAGCTACAAAATAAGAACAG
Seq A exon
GTAATAATGCTGTCACCTTTCCAGACACACAGCTTACCTCGTGTGACTAGACTCTAAGCTGGTTTCCCTAGAATGACCCATTTGCCTGGAGCATATATGGGTCAGAAGCCCTGAGAACAAGAGGCAAGGAGAGAATTTGGAGAGAATGTCTCAAAAGAACCCAAATTCCTGATTAGTCCTGAATTTTGTTTCTCATTCTAGGCCTTTAAAGACTCTGTCAGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAGGAGCTAACCCTATAGGTGGAATAACAATATGAACTAACCAGTACCCCCCGGAGCTCGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCAGTGGGAAGAGAGGCCCTTTGGTCGTGCAAACTTTATATGCCTCAGTACAGGGGAAGAAGTGGGAGTGGGTGGGTAGGGGAGTGGGGGGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATAAAAAATTTAAAAAAAAGAAGATAACACAAGTAAAAAAAAAAAAAAGACTCTGTCAGGCATCTTCCAAATTGCCTCAACATTATGAGGTTTAATCTACACCAAATACTAGCTGGGCTGTGAAGTAACATTGCCTGCAATCATATTTCTTGGCCTTTGGTTGGGGGCTCTCACTGTGGACTGCCAGCTTGCCTGAAACTTATACAGACCAGGTTATCCTTGGACTCAAGAGATATTCCTGCTTCTGTATTTCTAGGGCTGGGATTAGAAGCACACCCACCACGCCTAGTGGGGATCTTGTCTCTTGTGAGATGAACCACACTAGGAAAGCGGGAACAGTCTCTTCTCTGTTGGGTCATACTTCCTTTTTATAACTTATGGTGAGGCCTGGAGAGACAGCTCAGCAGGTAAAAGTGCTGGTCAGACAAGCCTGACAACCTGAGTTCAATTCCCAGAACACACATAAACTCGGAAGGAGAGAACCAATTCCACCAAACTGCCCGCTGACCTTCACGTGCCTCAGTGGAACGTGTCTATCCCTGCCACCCCCTCCCACATTCACTCACTTGCATGCACGCACCAGTAAATACCTTTAAAAGCTTATGATAAACCAAAAGGAAAAGTTAATTATGTGAAACTTAATTGCATTGAAATTTAAATATTTAAAAACCTTCAAGATAATCTATACAAGTGCAAACTTTTTTCCCCCCATCTTCACTCTACTAGGGGACACTGGAGAGTAGTTTTACAATGTACCAGGGGCTTCTTTCCTTGTTTTCAATCGAGACTGCGTCTGACATGGAGAATGGTCTAAACAGCACACCTCTCTCTTTATCCAGAAAGGGGATGAAGATGGGCTCACATCATCCTCAGAGTTAATCAACAACTCAACTGCATTATTCTTTGTGTTCTCTGGGTAACCTCAGGTTTACCCTCACTTTTATTTAGGAGATGGAAAAGCAAATAGATTGTTTTTTCTTATCTGAACAGTTTCCTTTCCTATTTTAAATTTCCCTTCTGCACGGTAAGAGATGAGAACTCAAGATGGTAACTGAGATGTAAACAATCTTATCTCCACTTGGCAGGTCTCCTGTGGATGCTGGTGGTAACTCTTACAGCCTCTCAGAAACGAGGCACGGCTCATTTTTTGAACACATTTCTTCCCGAGGCTTTGAAATCATGTCAATATACCTACCACGCCACCCAATGTCTTCTCTGTAAACTCTCCCATCATTCAGGATGCATAGGGGCTTGAATCTATAATCCACTTTGGAGACTAGTGTCCATGGATACTTATGTGCCTTATATAAGATGGGACAGTATGGCCCCATAGCTTACTTAATCCTTCTTATAGTTTAAACTGCCTCTATGTTGCTTACAGATAATAAAAAGATGACGTAACAACTGTGCTCAAAATTCTGCTGTATTATCTAGGGAGTAATAACAAAAAAGAGGGTACACGTTTAGCATGGATGCACTCCTCAAGTACTTTAAGTCTAGTATGATTATATCCACAGACGCAAAGCTAGTGGCCGTCAAGGGTTAACTATATCCACTGTTGGTATTTGCCTTTTTCCCCAGAAAAGTTCAACTCGTGCTCCTTATTTTATACCCATGGTAGAAACTGAATTTGCTACACAAGGGAATTGCTTTGAAATACACAGGACCTTCTGCTACATTTTAAAATTCATCGCAAGACTTGCCCCGATTGCTGTGTAAAGCAAGGTGCTTTGCTATAGAGATTAGTGTTACCAATCAGTGTAACCAGCCTGCTATGGTTTCTAGTAATTCAGGCATTCCGCCCCTTTCTTAAGTCCTTCACAGTTCTCCCAGTTTAACTGACGTGGATCAATAAGTAATGTGCCTTTTCAATAATTACAGTCACTTTGAGTTTATGATTAAATCCCGGAGTTTCTCCATAAAAGCACCTTGCCACACATATCTAACAACTCGGGATCAGCAGCGCTGAACAACCTGAACTGTTAAAAGAAAAGAAAATGTCCCCGAGGCACCGCTCGTTGGAGCTGCCTTCCTGGGGACGGGTACACAAAGCTTGATGCCATAAAAACCCATCAGCACAAGAACCACACGGAAGGAACAAGAGTCTTACAAGCTGCAGAAACTGTCTTTTCTTTTGTTACAGACATGGGCTGGAATAATACGGTTTCCTTGTCAAAAATGTCATGAAAGTTCCTTGATGACGTTAGATCTCTTGATGGGTGTTTCCTGCCTTCAATTCTGACCAGTCCAAGATTTTTAAAAATATGACTGGGGAAAAAATATGGGGCATTCCACATTCCACAGATGGTTTTCCAACAATATTCAAAATTTCTTCAAAGTAAAATTGCTTTCTTTATAGATTCAAGCAAAACCACAAATATTTATTGTGATCTACATTTCCCTCCAAATCAACACTACAGCACCTTTAGAATCTCGGGTTGAAGATACGTTTACTGTGCTCGCTTCATTTCATCAGTCTCTTTCCTTTTAGAAATAACTAACAAACGCTGGGCTCAGTACCAGGGCCATGAAGCACGAAGCAGCCACTAGTTCTGTGCATGTACCAAGAGGAAAGGTTCACAGTCAGGTTCTCCACTCTTTCATTCATCCCACGGACAAGGGCAGCTGCCGTAGGCCTTTACTGCAGGAGTCTGTTCCTAGAAGTAGTTCACAGTCTTAAACGCCTCACACTACTGTAATCCTATGCACTTGGAATTGTTTTCTCTAGTTTAATATACAGAAATAATTTCCAGTTAAAAATCATGATACTCTTAACTGAATCTGTGAGTGGTAATGCATCTTTATAAATCTTTACCATAGGATTAGAAATAACTATAACAACATTAATAAAACTTTTTGGTACTTATATAGCATGACTTTATCAAGAAAAATTTAATCAGCTTTTCAAGGGGCTTGCTCGGGTTGTAGGCATTGAGCACCCACTATAAGAGACAGGCTGGCTACACTCCCCAGAGGAAAAAATGGATTCAAATAAACCAACCCAAACCCAAACCCAAACCCAAAACCACAAACAAACAAACAAACAACATGGAGTTTAGAGTAAGAAAGATCTGGCACCAGATACCTGGGTGTGTCTGTAGGCATGTGATTTATTGTGTCTAAATTGTATTTTTGTTCATTTTTTTTCCTTGAACGCGAGACAGTAATATTGATACTGATAATAAATAATACGTCTTAGCTGTCAACCACCAGTCTGTTTATACTTTTACATGCACTTATTCCCTGGACCAGCCTTTTGCAGTGGATAATATTAACCCAGTTTACAGATGAGGGAACCAATACACAACTGAGTAAGTCACTTAATATCATAGAGCCAGAGGATTGCATGCACCTCCATCATAGAATAATATCTGGCACATGGTATCGAGAGCGTAGTTGCCATTATGATGATTCATATTAAAATGTAAATATTTTAGGAGAAAGGTAACACAGAACCCAAAGGTCTACTTCAAACTCGCGGCTCATACTCAAGAAAAGCAGTCTGAAAGCGGGGCTTGGAATAATGCCACCTCCCCAGAAGCTGTGGCTGGCACAGTATATGGCCTAGGGCCAGTGCACTCCTGAACAGGCCCCACTGCATACTCCGTCAGGTTTACCCACTTGCACGAGCAGACCTAAATAGCTCACCTTGGTAATCTGAAAGGTTTCATTGGGCCATGAGAAATCTTCCTACTTACAAAAAGTTTGTCTTTGCTGTTTCTTTGTTTTAAAGCTTCCTTTCTGTGTAGAGGCTTTTGCTTGCACATAGGTATGAGCATCATGTGTGTGTTTGGTTCCTGGAGAGGTTGCAACAGGGCATCGGATCCTCTAGAACTGGGATTATGGAAGTAGCTACGTTCAACACTATATATCAGAACATGGAGTTATAAGTAGTTGTGAGAGACCATAAGGCTACTGGAAACTGAAGCCAGGTCTTCTACTAGAGCAGCCAGTGTGTCCAGTCCCTAAATCTTCCCACTTTATACTGTGTTTTAACCAAACACCACAGAAGTCCGGGGAACAGAGAAAGGGACTTACTGGCTTTGGAAAGGGTGAGATTTTATCATGCACTTGGCTTGAGACGTTCATGCGGAGCGCCCTTCACTTACAAACCCCTTCCCCCGTAAG
Seq C2 exon
CTTCCTAGAACAGAAAGTTCTGGACATGGAGGGCAAGCACAGCGAGCAGCTACAGTCCATGAAGGAGCAGAAGGACGAGCTCCAGGTGCTGGTGTCCAAGCAGAGCTCTGTCATTGACGAGCTGGAGAAGAAGCTGGTGACAGCCACGGTCAACAACTCGCTCCTTCAGAAGCAGCAGCATGACCTAATGGAGACCGTCAACAGCTTGCTGACCATGATGTCATCACCCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031465:ENSMUST00000033846:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.203
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types